MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.9 nTPM
HPA:13.9 nTPM
GTEx:11.4 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Mouse:7.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2586 Male, age 75, left hemisphere 17.7
2219 Male, age 76, both hemispheres 16.7
2828 Female, age 72, unknown 13.7
1830 Male, age 51, unknown 13.2
1833 Male, age 53, unknown 12.0
1870 Female, age 42, unknown 12.0
1827 Male, age 72, unknown 11.7
2411 Female, age 72, unknown 11.2
2019 Male, age 18, unknown 9.2
2666 Male, age 74, left hemisphere 7.8
Dorsal raphe nucleus
nTPM: 8.9
2750 Male, age 76, both hemispheres 12.2
2016 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 9.0
2047 Male, age 72, unknown 6.9
2298 Female, age 72, unknown 6.2
Inferior colliculus
nTPM: 12.3
1848 Female, age 42, unknown 13.8
2849 Male, age 72, unknown 13.4
1890 Male, age 53, unknown 12.0
2097 Female, age 72, unknown 10.0
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Pedunculopontine tegmental nucleus
nTPM: 9.9
1921 Female, age 85, both hemispheres 13.7
2338 Male, age 61, both hemispheres 8.1
2334 Male, age 80, both hemispheres 7.8
Periaquaductal grey, anterior
nTPM: 9.9
1795 Male, age 51, unknown 10.4
2502 Female, age 75, unknown 9.9
1947 Male, age 18, unknown 9.5
Periaquaductal grey, dorsal
nTPM: 10.3
1840 Male, age 53, unknown 11.4
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 11.1
2850 Male, age 76, both hemispheres 7.3
Periaquaductal grey, lateral
nTPM: 10.1
2053 Male, age 18, unknown 12.4
2140 Male, age 76, both hemispheres 10.2
2272 Male, age 74, both hemispheres 7.8
Pretectal area
nTPM: 11.0
1815 Male, age 53, unknown 14.0
2667 Female, age 75, unknown 14.0
2825 Male, age 18, unknown 11.6
1944 Female, age 72, unknown 11.0
2316 Male, age 76, right hemisphere 10.9
1817 Female, age 42, unknown 10.8
2007 Male, age 72, unknown 10.6
2407 Male, age 75, both hemispheres 10.4
1816 Male, age 51, unknown 10.2
2273 Male, age 74, both hemispheres 9.6
2224 Female, age 72, unknown 8.2
Red nucleus
nTPM: 13.9
2503 Female, age 72, unknown 15.8
1954 Female, age 42, unknown 15.7
2823 Male, age 76, right hemisphere 15.5
1865 Male, age 51, unknown 15.2
2769 Male, age 72, unknown 15.2
2227 Male, age 72, unknown 15.0
2588 Male, age 74, left hemisphere 14.4
1904 Male, age 53, unknown 14.3
2785 Male, age 18, unknown 12.5
2725 Female, age 75, unknown 11.6
1821 Female, age 72, unknown 11.5
2584 Male, age 75, left hemisphere 9.6
Substantia nigra
nTPM: 7.7
2583 Male, age 75, right hemisphere 11.1
1889 Female, age 72, unknown 10.2
2590 Female, age 75, unknown 8.8
2665 Male, age 74, both hemispheres 8.7
2699 Male, age 18, unknown 7.6
1851 Male, age 51, unknown 7.0
1916 Female, age 42, unknown 6.8
2409 Female, age 72, unknown 6.5
1941 Male, age 53, unknown 5.1
2241 Male, age 72, unknown 5.0
Superior colliculus
nTPM: 12.1
1895 Male, age 76, right hemisphere 14.9
1995 Male, age 72, unknown 14.4
2261 Male, age 18, unknown 14.0
2087 Female, age 72, unknown 12.2
1913 Female, age 42, unknown 12.1
1796 Male, age 53, unknown 11.9
1839 Male, age 51, unknown 11.7
2664 Male, age 75, both hemispheres 11.0
2668 Female, age 75, unknown 9.8
2587 Male, age 74, left hemisphere 8.9
Ventral tegmental area
nTPM: 8.5
2223 Female, age 72, unknown 10.7
2410 Female, age 72, unknown 9.5
2218 Male, age 76, both hemispheres 8.1
1942 Male, age 51, unknown 7.9
2021 Male, age 53, unknown 7.6
1915 Female, age 42, unknown 7.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 139

Max nTPM: 23.6
Min nTPM: 3.9
Std nTPM: 3.3
Median nTPM: 11.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 20.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 19.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 18.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 17.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 17.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 16.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 7.8
Min nTPM: 7.0
Sample A Male 7.2
Sample B Male 7.0
Sample C Female 7.8
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75084530 Antisense, RP_060412_04_C11, Mouse strain C57BL/6J (56 days, male) 0.5
69782981 Antisense, RP_050505_04_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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