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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:33.8 nTPM
HPA:28.3 nTPM
GTEx:33.8 nTPM
FANTOM5:129.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA024618
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 28.3
overview
Male, age 65
Small intestine sample 232
nTPM: 20.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 33.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 26.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 32.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 33.8
Samples: 187

Max nTPM: 127.0
Min nTPM: 4.5
Std nTPM: 30.6
Median nTPM: 20.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 127.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 122.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 118.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 118.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 113.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 108.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 105.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 104.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 103.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 99.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 99.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 97.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 95.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 89.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 88.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 88.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 87.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 85.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 85.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 83.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 82.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 80.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 80.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 79.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 75.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 71.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 70.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 70.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 70.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 67.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 67.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 66.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 64.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 63.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 61.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 61.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 60.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 60.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 58.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 57.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 57.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 56.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 54.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 53.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 53.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 51.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 49.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 47.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 46.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 46.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 46.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 45.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 43.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 43.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 42.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 41.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 41.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 40.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 40.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 39.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 39.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 39.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 38.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 37.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 37.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 35.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 34.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 33.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 32.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 32.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 31.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 31.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 31.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 30.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 30.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 30.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 29.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 28.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 27.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 27.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 27.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 26.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 25.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 25.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 25.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 24.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 24.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 24.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 24.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 23.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 23.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 23.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 23.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 20.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 19.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 19.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 19.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 19.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 18.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 17.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 17.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 17.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 17.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 16.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 16.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 16.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 15.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 14.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 14.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 14.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 14.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 14.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 13.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 13.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 13.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 13.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 13.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 12.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 12.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 12.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 12.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 12.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 12.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 12.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 11.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 11.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 11.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 11.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 11.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 11.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 10.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 10.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 10.7
GTEX-1192X-2526-SM-59868 50-59 years, male 10.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 10.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 10.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 10.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 9.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 9.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 9.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 9.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 9.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 9.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 9.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 9.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 9.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 9.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 8.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 8.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 8.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 8.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 8.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 7.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 7.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 7.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 7.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 7.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 7.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 6.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 6.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 6.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 6.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 6.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 6.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 5.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 5.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 5.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 5.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 5.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 5.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 5.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 4.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 129.3
FF:10024-101D6 15,40,85 years, mixed 129.3

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The Human Protein Atlas project is funded
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