MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA:58.4 nTPM
GTEx:38.0 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:92.2 nTPM
Mouse:165.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.0
1870 Female, age 42, unknown 52.4
2411 Female, age 72, unknown 49.3
2828 Female, age 72, unknown 46.2
1827 Male, age 72, unknown 45.0
1830 Male, age 51, unknown 44.6
1833 Male, age 53, unknown 42.8
2666 Male, age 74, left hemisphere 37.0
2586 Male, age 75, left hemisphere 32.2
2219 Male, age 76, both hemispheres 31.2
2019 Male, age 18, unknown 29.4
Dorsal raphe nucleus
nTPM: 48.8
2750 Male, age 76, both hemispheres 57.2
2298 Female, age 72, unknown 55.9
2047 Male, age 72, unknown 53.9
1828 Male, age 53, unknown 41.2
2016 Female, age 72, unknown 35.9
Inferior colliculus
nTPM: 40.7
1848 Female, age 42, unknown 44.7
2097 Female, age 72, unknown 40.6
2849 Male, age 72, unknown 39.9
1890 Male, age 53, unknown 37.4
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Pedunculopontine tegmental nucleus
nTPM: 47.2
2334 Male, age 80, both hemispheres 54.3
1921 Female, age 85, both hemispheres 51.7
2338 Male, age 61, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 53.0
1947 Male, age 18, unknown 59.8
2502 Female, age 75, unknown 52.8
1795 Male, age 51, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 43.2
2850 Male, age 76, both hemispheres 50.8
2464 Female, age 72, unknown 44.1
1831 Male, age 72, unknown 39.6
1840 Male, age 53, unknown 38.2
Periaquaductal grey, lateral
nTPM: 44.3
2053 Male, age 18, unknown 48.2
2140 Male, age 76, both hemispheres 42.8
2272 Male, age 74, both hemispheres 41.8
Pretectal area
nTPM: 42.5
2667 Female, age 75, unknown 51.6
2825 Male, age 18, unknown 49.4
2224 Female, age 72, unknown 48.7
2273 Male, age 74, both hemispheres 43.7
1815 Male, age 53, unknown 43.6
2316 Male, age 76, right hemisphere 40.9
1817 Female, age 42, unknown 39.5
1816 Male, age 51, unknown 39.2
2007 Male, age 72, unknown 38.2
1944 Female, age 72, unknown 37.2
2407 Male, age 75, both hemispheres 35.6
Red nucleus
nTPM: 37.2
1865 Male, age 51, unknown 46.9
2725 Female, age 75, unknown 46.6
1821 Female, age 72, unknown 44.3
1954 Female, age 42, unknown 40.3
1904 Male, age 53, unknown 38.2
2503 Female, age 72, unknown 36.1
2227 Male, age 72, unknown 36.0
2769 Male, age 72, unknown 35.2
2823 Male, age 76, right hemisphere 34.1
2588 Male, age 74, left hemisphere 33.0
2785 Male, age 18, unknown 31.8
2584 Male, age 75, left hemisphere 24.1
Substantia nigra
nTPM: 31.3
1916 Female, age 42, unknown 44.4
1941 Male, age 53, unknown 38.8
1889 Female, age 72, unknown 37.0
2241 Male, age 72, unknown 34.1
2665 Male, age 74, both hemispheres 30.7
2699 Male, age 18, unknown 29.6
1851 Male, age 51, unknown 27.2
2583 Male, age 75, right hemisphere 24.9
2590 Female, age 75, unknown 24.2
2409 Female, age 72, unknown 22.1
Superior colliculus
nTPM: 42.2
2664 Male, age 75, both hemispheres 49.4
2261 Male, age 18, unknown 48.3
1839 Male, age 51, unknown 47.6
2587 Male, age 74, left hemisphere 43.4
1895 Male, age 76, right hemisphere 42.8
2087 Female, age 72, unknown 41.2
1796 Male, age 53, unknown 39.0
1913 Female, age 42, unknown 37.8
1995 Male, age 72, unknown 37.3
2668 Female, age 75, unknown 35.0
Ventral tegmental area
nTPM: 42.3
2223 Female, age 72, unknown 53.6
2218 Male, age 76, both hemispheres 44.7
2021 Male, age 53, unknown 41.9
2410 Female, age 72, unknown 40.3
1915 Female, age 42, unknown 37.8
1942 Male, age 51, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 133.5
Min nTPM: 12.4
Std nTPM: 19.5
Median nTPM: 32.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 133.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 102.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 92.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 85.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 81.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 77.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 75.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 71.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 69.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.2
Pig sample Sample description nTPM
Midbrain
nTPM: 92.2
Samples: 4

Max nTPM: 154.4
Min nTPM: 52.0
Sample A Female 154.4
Sample B Female 99.5
Sample C Male 63.0
Sample D Male 52.0
Periaqueductal gray
nTPM: 78.4
Samples: 3

Max nTPM: 85.8
Min nTPM: 69.3
Sample B Female 85.8
Sample C Male 80.0
Sample D Male 69.3
Substantia nigra
nTPM: 72.8
Samples: 4

Max nTPM: 104.2
Min nTPM: 58.2
Sample A Female 104.2
Sample B Female 58.2
Sample C Male 68.1
Sample D Male 60.6
Superior colliculi
nTPM: 61.1
Samples: 4

Max nTPM: 67.0
Min nTPM: 48.4
Sample A Female 64.4
Sample B Female 48.4
Sample C Male 67.0
Sample D Male 64.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.4
Samples: 4

Max nTPM: 171.6
Min nTPM: 157.7
Sample A Male 171.6
Sample B Male 168.3
Sample C Female 157.7
Sample D Female 164.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
70439123 Antisense, RP_050614_03_C01, Mouse strain C57BL/6J (56 days, male) 3.5
74750020 Antisense, RP_060220_05_E10, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.