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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:31.4 nTPM
GTEx:31.4 nTPM
FANTOM5:32.8 Scaled Tags Per Million
Pig:160.2 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 31.4
Samples: 105

Max nTPM: 80.6
Min nTPM: 6.2
Std nTPM: 16.1
Median nTPM:
506_1 65 years, male 80.6
351_1 91 years, male 79.2
251_1 78 years, male 76.9
318_1 68 years, male 67.2
189_1 76 years, male 65.1
379_1 60 years, male 64.9
352_1 62 years, male 61.1
163_1 78 years, male 58.2
377_1 82 years, female 58.2
404_1 82 years, female 57.9
177_1 74 years, male 57.8
335_1 73 years, female 56.5
319_1 81 years, male 55.1
526_1 61 years, male 50.3
356_1 87 years, female 48.7
405_1 91 years, male 47.9
350_1 84 years, female 47.3
295_1 61 years, female 46.3
348_1 84 years, male 45.4
425_1 59 years, female 44.7
406_1 79 years, male 43.6
292_1 71 years, male 43.0
394_1 75 years, female 41.8
501_1 88 years, male 41.0
254_1 77 years, female 40.5
503_1 68 years, male 38.6
18_1 88 years, male 38.5
355_1 70 years, female 37.5
137_1 83 years, male 37.2
264_1 73 years, female 36.9
99_1 64 years, male 35.6
321_1 62 years, female 34.0
291_1 76 years, male 33.8
126_1 63 years, male 33.5
4_1 88 years, female 33.4
316_1 62 years, male 33.4
320_1 89 years, female 33.4
322_1 76 years, male 33.3
452_1 88 years, female 33.1
389_1 86 years, female 32.6
354_1 81 years, female 32.0
17_1 71 years, male 31.6
315_1 62 years, female 31.5
353_1 82 years, female 31.4
120_1 70 years, female 31.3
153_1 70 years, female 30.9
386_1 76 years, male 29.8
308_1 70 years, female 29.5
293_1 68 years, female 29.4
517_1 88 years, male 29.1
173_1 67 years, male 28.8
172_1 72 years, female 28.4
35_1 74 years, female 27.9
109_1 81 years, female 27.8
349_1 83 years, male 27.5
9_1 66 years, female 27.4
266_1 85 years, male 27.3
142_1 61 years, female 25.7
6_1 73 years, female 25.3
376_1 75 years, female 24.9
41_1 94 years, female 24.8
246_1 77 years, male 24.7
139_1 64 years, female 24.5
415_1 77 years, female 24.0
466_1 57 years, female 24.0
243_1 75 years, male 23.9
468_1 89 years, male 23.8
43_1 64 years, female 23.7
229_1 69 years, female 23.7
447_1 81 years, male 23.3
145_1 84 years, male 22.3
414_1 84 years, female 22.2
499_1 55 years, female 22.2
288_1 66 years, female 21.6
265_1 87 years, male 21.4
217_1 76 years, male 20.8
286_1 68 years, female 20.6
115_1 83 years, male 20.5
149_1 88 years, male 20.1
32_1 67 years, male 19.9
324_1 76 years, male 19.6
42_1 85 years, male 19.0
81_1 67 years, male 19.0
396_1 62 years, male 18.6
218_1 71 years, female 18.5
162_1 79 years, female 18.1
317_1 60 years, male 17.8
313_1 79 years, female 17.5
307_1 66 years, female 17.2
480_1 63 years, male 16.4
518_1 75 years, female 15.6
314_1 67 years, male 14.3
117_1 61 years, male 14.1
495_1 57 years, female 14.0
375_1 74 years, female 13.9
413_1 59 years, female 13.9
491_1 89 years, female 12.7
89_1 63 years, male 12.5
119_1 70 years, female 12.0
347_1 72 years, male 11.7
384_1 83 years, male 11.5
490_1 67 years, female 10.0
237_1 82 years, male 7.9
2_1 77 years, female 7.8
311_1 78 years, male 6.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 32.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 32.8
FF:10030-101E3 24-65 years, mixed 32.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.2
Pig sample Sample description nTPM
Retina
nTPM: 160.2
Samples: 4

Max nTPM: 291.1
Min nTPM: 86.0
Sample A Female 86.0
Sample B Female 141.5
Sample C Male 291.1
Sample D Male 122.1

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by the Knut & Alice Wallenberg Foundation.