MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:41.7 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:96.0 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
2411 Female, age 72, unknown 45.0
1870 Female, age 42, unknown 44.9
1827 Male, age 72, unknown 44.6
2586 Male, age 75, left hemisphere 44.4
2019 Male, age 18, unknown 43.1
1833 Male, age 53, unknown 42.9
2666 Male, age 74, left hemisphere 42.6
1830 Male, age 51, unknown 42.0
2828 Female, age 72, unknown 41.8
2219 Male, age 76, both hemispheres 41.4
Dorsal raphe nucleus
nTPM: 43.9
2298 Female, age 72, unknown 46.7
1828 Male, age 53, unknown 44.4
2016 Female, age 72, unknown 43.5
2047 Male, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 41.5
Inferior colliculus
nTPM: 45.1
1848 Female, age 42, unknown 46.1
2097 Female, age 72, unknown 46.0
2849 Male, age 72, unknown 44.4
1890 Male, age 53, unknown 44.0
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Pedunculopontine tegmental nucleus
nTPM: 44.2
1921 Female, age 85, both hemispheres 45.1
2334 Male, age 80, both hemispheres 44.2
2338 Male, age 61, both hemispheres 43.4
Periaquaductal grey, anterior
nTPM: 43.4
1947 Male, age 18, unknown 44.5
1795 Male, age 51, unknown 43.5
2502 Female, age 75, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 44.3
1840 Male, age 53, unknown 47.0
2850 Male, age 76, both hemispheres 44.5
1831 Male, age 72, unknown 42.9
2464 Female, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 42.8
2140 Male, age 76, both hemispheres 44.3
2053 Male, age 18, unknown 42.8
2272 Male, age 74, both hemispheres 41.3
Pretectal area
nTPM: 43.8
1816 Male, age 51, unknown 45.2
2007 Male, age 72, unknown 44.8
2273 Male, age 74, both hemispheres 44.7
1817 Female, age 42, unknown 44.6
1944 Female, age 72, unknown 44.4
2667 Female, age 75, unknown 43.9
2825 Male, age 18, unknown 43.5
2224 Female, age 72, unknown 43.1
1815 Male, age 53, unknown 43.0
2316 Male, age 76, right hemisphere 42.7
2407 Male, age 75, both hemispheres 42.2
Red nucleus
nTPM: 43.2
1821 Female, age 72, unknown 46.7
2725 Female, age 75, unknown 46.4
2823 Male, age 76, right hemisphere 43.4
2588 Male, age 74, left hemisphere 43.2
2503 Female, age 72, unknown 43.1
2769 Male, age 72, unknown 43.0
1954 Female, age 42, unknown 42.9
2785 Male, age 18, unknown 42.8
2227 Male, age 72, unknown 42.1
1865 Male, age 51, unknown 41.9
1904 Male, age 53, unknown 41.8
2584 Male, age 75, left hemisphere 41.6
Substantia nigra
nTPM: 43.0
1941 Male, age 53, unknown 44.6
1916 Female, age 42, unknown 44.1
2241 Male, age 72, unknown 44.1
1851 Male, age 51, unknown 44.0
1889 Female, age 72, unknown 43.5
2583 Male, age 75, right hemisphere 43.5
2590 Female, age 75, unknown 42.8
2665 Male, age 74, both hemispheres 42.2
2699 Male, age 18, unknown 41.5
2409 Female, age 72, unknown 39.3
Superior colliculus
nTPM: 42.9
1895 Male, age 76, right hemisphere 44.9
2261 Male, age 18, unknown 44.0
2587 Male, age 74, left hemisphere 43.4
1796 Male, age 53, unknown 43.3
1839 Male, age 51, unknown 43.3
2087 Female, age 72, unknown 43.3
1995 Male, age 72, unknown 43.0
1913 Female, age 42, unknown 41.8
2668 Female, age 75, unknown 41.3
2664 Male, age 75, both hemispheres 41.1
Ventral tegmental area
nTPM: 42.6
2410 Female, age 72, unknown 44.5
1915 Female, age 42, unknown 44.3
2218 Male, age 76, both hemispheres 42.7
1942 Male, age 51, unknown 42.2
2021 Male, age 53, unknown 41.1
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.7
Samples: 139

Max nTPM: 71.5
Min nTPM: 24.8
Std nTPM: 7.9
Median nTPM: 40.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 69.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 59.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 58.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 57.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 57.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 56.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 54.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.3
FF:10158-103A5 76 years, female 46.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.1
Pig sample Sample description nTPM
Midbrain
nTPM: 56.2
Samples: 4

Max nTPM: 70.5
Min nTPM: 48.9
Sample A Female 70.5
Sample B Female 52.2
Sample C Male 48.9
Sample D Male 53.0
Periaqueductal gray
nTPM: 45.8
Samples: 3

Max nTPM: 46.1
Min nTPM: 45.5
Sample B Female 46.1
Sample C Male 45.8
Sample D Male 45.5
Substantia nigra
nTPM: 48.4
Samples: 4

Max nTPM: 66.2
Min nTPM: 41.8
Sample A Female 66.2
Sample B Female 43.5
Sample C Male 41.9
Sample D Male 41.8
Superior colliculi
nTPM: 55.3
Samples: 4

Max nTPM: 66.8
Min nTPM: 50.7
Sample A Female 66.8
Sample B Female 51.0
Sample C Male 50.7
Sample D Male 52.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.0
Samples: 4

Max nTPM: 102.4
Min nTPM: 90.5
Sample A Male 97.6
Sample B Male 90.5
Sample C Female 93.4
Sample D Female 102.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
513234 Antisense, RP_040810_01_D01, Mouse strain C57BL/6J (56 days, male) 2.2
75931524 Antisense, RP_060606_01_B03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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