We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTPRN
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PTPRN
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: Medium
Synapses: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:76.3 nTPM
FANTOM5:150.0 Scaled Tags Per Million
Pig:51.5 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA007179
Glial cells Not detected
Neuronal cells Low
Neuronal projections Medium
Synapses High

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA007179
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 76.3
Samples: 246

Max nTPM: 191.3
Min nTPM: 10.1
Std nTPM: 35.9
Median nTPM: 75.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 191.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 187.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 173.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 162.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 152.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 142.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 141.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 139.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 138.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 138.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 137.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 135.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 135.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 134.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 133.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 133.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 133.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 131.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 130.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 130.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 129.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 125.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 124.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 121.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 120.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 120.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 119.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 118.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 118.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 117.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 116.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 114.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 114.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 113.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 113.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 113.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 111.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 108.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 108.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 107.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 105.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 103.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 102.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 102.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 102.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 102.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 101.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 100.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 99.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 99.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 98.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 98.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 98.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 98.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 97.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 97.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 97.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 97.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 97.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 96.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 96.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 96.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 95.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 95.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 95.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 95.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 94.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 93.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 93.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 93.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 92.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 92.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 91.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 90.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 90.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 90.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 90.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 89.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 89.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 88.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 88.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 87.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 85.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 85.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 85.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 84.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 84.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 83.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 83.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 83.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 83.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 82.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 82.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 80.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 79.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 79.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 79.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 78.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 78.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 77.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 77.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 77.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 77.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 77.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 76.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 76.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 75.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 75.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 75.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 74.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 74.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 74.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 73.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 72.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 72.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 71.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 71.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 71.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 70.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 70.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 70.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 69.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 68.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 67.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 65.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 65.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 64.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 64.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 64.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 63.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 62.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 62.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 62.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 61.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 61.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 61.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 60.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 60.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 58.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 57.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 56.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 56.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 55.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 55.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 54.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 54.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 54.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 53.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 53.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 52.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 52.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 52.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 52.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 51.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 50.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 49.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 49.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 49.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 47.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 47.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 46.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 46.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 45.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 45.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 45.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 44.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 44.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 42.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 41.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 41.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 40.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 40.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 39.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 39.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 38.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 38.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 37.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 37.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 36.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 36.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 35.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 33.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 31.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 31.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 31.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 30.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 30.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 30.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 29.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 28.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 28.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 28.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 27.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 26.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 25.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 25.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 25.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 23.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 21.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 20.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 18.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 16.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 16.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 15.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 12.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 12.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 10.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 150.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 150.0
FF:10164-103B2 76 years, female 150.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.5
Pig sample Sample description nTPM
Caudate
nTPM: 51.5
Samples: 4

Max nTPM: 62.0
Min nTPM: 37.3
Sample A Female 37.3
Sample B Female 55.5
Sample C Male 62.0
Sample D Male 51.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.