MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.6 nTPM
HPA:61.6 nTPM
GTEx:56.7 nTPM
FANTOM5:370.1 Scaled Tags Per Million
Pig:154.9 nTPM
Mouse:153.4 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.6
2666 Male, age 74, left hemisphere 71.9
2411 Female, age 72, unknown 64.4
2219 Male, age 76, both hemispheres 64.3
1827 Male, age 72, unknown 62.2
1830 Male, age 51, unknown 62.0
2586 Male, age 75, left hemisphere 61.6
1833 Male, age 53, unknown 61.3
1870 Female, age 42, unknown 57.5
2828 Female, age 72, unknown 56.8
2019 Male, age 18, unknown 54.3
Dorsal raphe nucleus
nTPM: 50.0
2750 Male, age 76, both hemispheres 63.1
2047 Male, age 72, unknown 51.9
1828 Male, age 53, unknown 51.4
2016 Female, age 72, unknown 44.3
2298 Female, age 72, unknown 39.3
Inferior colliculus
nTPM: 48.5
2849 Male, age 72, unknown 54.2
1848 Female, age 42, unknown 51.6
2097 Female, age 72, unknown 45.1
1890 Male, age 53, unknown 43.0
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 44.6
2334 Male, age 80, both hemispheres 57.4
1921 Female, age 85, both hemispheres 52.8
2338 Male, age 61, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 58.7
2502 Female, age 75, unknown 68.1
1947 Male, age 18, unknown 60.5
1795 Male, age 51, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 40.8
2464 Female, age 72, unknown 55.1
1840 Male, age 53, unknown 41.7
1831 Male, age 72, unknown 40.2
2850 Male, age 76, both hemispheres 26.1
Periaquaductal grey, lateral
nTPM: 36.4
2053 Male, age 18, unknown 44.8
2272 Male, age 74, both hemispheres 37.6
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 46.6
2825 Male, age 18, unknown 53.8
1816 Male, age 51, unknown 52.6
2407 Male, age 75, both hemispheres 51.5
1815 Male, age 53, unknown 51.2
1944 Female, age 72, unknown 49.2
1817 Female, age 42, unknown 46.7
2007 Male, age 72, unknown 46.1
2224 Female, age 72, unknown 42.4
2316 Male, age 76, right hemisphere 41.4
2273 Male, age 74, both hemispheres 40.8
2667 Female, age 75, unknown 36.5
Red nucleus
nTPM: 58.0
1821 Female, age 72, unknown 65.3
2588 Male, age 74, left hemisphere 64.8
1865 Male, age 51, unknown 63.6
2823 Male, age 76, right hemisphere 63.5
1904 Male, age 53, unknown 59.4
1954 Female, age 42, unknown 58.8
2503 Female, age 72, unknown 57.7
2227 Male, age 72, unknown 56.2
2769 Male, age 72, unknown 55.5
2584 Male, age 75, left hemisphere 55.2
2785 Male, age 18, unknown 53.9
2725 Female, age 75, unknown 42.2
Substantia nigra
nTPM: 61.0
1941 Male, age 53, unknown 74.7
2665 Male, age 74, both hemispheres 69.0
1916 Female, age 42, unknown 68.4
2241 Male, age 72, unknown 66.3
2583 Male, age 75, right hemisphere 64.9
1851 Male, age 51, unknown 63.8
2699 Male, age 18, unknown 57.5
2590 Female, age 75, unknown 52.1
1889 Female, age 72, unknown 49.3
2409 Female, age 72, unknown 43.7
Superior colliculus
nTPM: 55.1
2668 Female, age 75, unknown 84.8
1839 Male, age 51, unknown 57.8
2587 Male, age 74, left hemisphere 56.4
1895 Male, age 76, right hemisphere 55.9
2664 Male, age 75, both hemispheres 55.6
1913 Female, age 42, unknown 54.0
2261 Male, age 18, unknown 49.0
1796 Male, age 53, unknown 48.6
1995 Male, age 72, unknown 45.2
2087 Female, age 72, unknown 43.2
Ventral tegmental area
nTPM: 53.3
2410 Female, age 72, unknown 72.3
2223 Female, age 72, unknown 55.8
2218 Male, age 76, both hemispheres 52.7
1915 Female, age 42, unknown 50.0
1942 Male, age 51, unknown 45.8
2021 Male, age 53, unknown 43.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 139

Max nTPM: 103.4
Min nTPM: 28.9
Std nTPM: 11.7
Median nTPM: 54.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 103.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 85.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 78.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 77.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 76.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 75.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 370.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 370.1
FF:10158-103A5 76 years, female 370.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 154.9
Pig sample Sample description nTPM
Midbrain
nTPM: 154.9
Samples: 4

Max nTPM: 190.7
Min nTPM: 130.5
Sample A Female 190.7
Sample B Female 135.0
Sample C Male 163.3
Sample D Male 130.5
Periaqueductal gray
nTPM: 122.3
Samples: 3

Max nTPM: 127.9
Min nTPM: 112.4
Sample B Female 126.7
Sample C Male 127.9
Sample D Male 112.4
Substantia nigra
nTPM: 154.6
Samples: 4

Max nTPM: 171.9
Min nTPM: 106.1
Sample A Female 169.5
Sample B Female 106.1
Sample C Male 170.7
Sample D Male 171.9
Superior colliculi
nTPM: 129.6
Samples: 4

Max nTPM: 153.4
Min nTPM: 83.7
Sample A Female 130.7
Sample B Female 83.7
Sample C Male 150.6
Sample D Male 153.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 153.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.4
Samples: 4

Max nTPM: 164.8
Min nTPM: 122.5
Sample A Male 122.5
Sample B Male 163.5
Sample C Female 164.8
Sample D Female 162.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
74003383 Antisense, RP_051130_01_E10, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.