HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:20.0 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:11.0 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047707Antibody HPA051964
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Hippocampus
nTPM: 10.3
1911 Female, age 85, right hemisphere 19.4
2529 Female, age 94, left hemisphere 16.1
2621 Female, age 67, right hemisphere 7.9
2148 Female, age 91, left hemisphere 7.8
1898 Male, age 80, left hemisphere 6.3
1855 Male, age 76, left hemisphere 4.1
Dentate gyrus
nTPM: 13.1
2530 Female, age 94, left hemisphere 34.8
2010 Male, age 76, both hemispheres 14.0
2528 Male, age 74, both hemispheres 13.7
2246 Female, age 85, both hemispheres 9.1
2531 Female, age 67, both hemispheres 5.5
1927 Female, age 91, both hemispheres 1.3
Entorhinal gyrus
nTPM: 13.9
2117 Female, age 91, right hemisphere 31.4
2764 Male, age 80, right hemisphere 25.9
2613 Female, age 94, left hemisphere 9.6
2686 Male, age 75, right hemisphere 7.0
1938 Female, age 85, left hemisphere 5.3
1787 Male, age 76, left hemisphere 4.5
Hippocampus, CA1
nTPM: 6.3
2082 Female, age 91, right hemisphere 11.9
1873 Female, age 85, both hemispheres 10.1
2527 Male, age 74, both hemispheres 8.0
2749 Male, age 80, left hemisphere 1.6
2045 Male, age 76, both hemispheres 0.0
Hippocampus, CA2
nTPM: 12.2
1963 Male, age 80, left hemisphere 18.8
2437 Female, age 94, left hemisphere 15.4
2249 Male, age 74, both hemispheres 14.4
2113 Female, age 91, right hemisphere 14.2
1940 Female, age 85, left hemisphere 10.4
1892 Male, age 76, both hemispheres 0.0
Hippocampus, CA3
nTPM: 6.1
1891 Female, age 85, both hemispheres 28.3
1867 Male, age 76, both hemispheres 6.3
2436 Male, age 74, both hemispheres 1.9
2137 Male, age 80, left hemisphere 0.0
2620 Female, age 94, left hemisphere 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 8.4
2692 Male, age 74, both hemispheres 20.4
2532 Female, age 72, left hemisphere 17.5
1990 Female, age 91, right hemisphere 16.8
1850 Male, age 80, both hemispheres 9.0
2018 Male, age 76, both hemispheres 8.6
2245 Female, age 91, both hemispheres 5.9
1933 Female, age 85, both hemispheres 4.3
2693 Female, age 94, both hemispheres 1.9
2250 Female, age 67, right hemisphere 0.0
2622 Female, age 67, right hemisphere 0.0
Perirhinal gyrus
nTPM: 0.5
2521 Female, age 94, right hemisphere 2.3
1794 Male, age 80, right hemisphere 0.3
1841 Female, age 85, right hemisphere 0.0
1847 Female, age 91, left hemisphere 0.0
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 24.9
2042 Male, age 76, both hemispheres 39.2
1901 Male, age 80, both hemispheres 36.5
2438 Female, age 94, left hemisphere 25.7
1977 Female, age 85, both hemispheres 20.3
2619 Male, age 74, both hemispheres 15.8
2729 Female, age 91, right hemisphere 12.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.0
Samples: 197

Max nTPM: 93.6
Min nTPM: 0.9
Std nTPM: 15.1
Median nTPM: 15.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 93.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 62.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 60.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 60.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 58.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 56.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 56.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 55.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 53.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 53.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 52.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 73.7
FF:10153-102I9 76 years, female 87.8
FF:10169-103B7 60 years, female 59.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.7
Samples: 4

Max nTPM: 56.0
Min nTPM: 11.2
Sample A Female 47.1
Sample B Female 28.6
Sample C Male 56.0
Sample D Male 11.2
Entorhinal cortex
nTPM: 11.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 7.9
Sample A Female 8.2
Sample B Female 16.1
Sample C Male 7.9
Sample D Male 14.8
Subiculum
nTPM: 14.8
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.4
Sample A Female 14.0
Sample B Female 19.4
Sample C Male 12.4
Sample D Male 13.5
Ventral hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 37.6
Min nTPM: 13.8
Sample A Female 27.1
Sample B Female 13.8
Sample C Male 24.6
Sample D Male 37.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.7
Samples: 4

Max nTPM: 8.6
Min nTPM: 2.7
Sample A Male 8.6
Sample B Male 6.4
Sample C Female 5.2
Sample D Female 2.7
Hippocampal formation
nTPM: 11.0
Samples: 4

Max nTPM: 15.0
Min nTPM: 6.8
Sample A Male 6.8
Sample B Male 9.6
Sample C Female 15.0
Sample D Female 12.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
70300857 Antisense, RP_050607_02_E05, Mouse strain C57BL/6J (56 days, male) 3.0

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