BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.4 nTPM
HPA:3.4 nTPM
GTEx:8.6 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:10.0 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.3
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.0
2491 Male, age 75, both hemispheres 0.4
2196 Female, age 79, unknown 0.2
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 2.0
1856 Female, age 91, right hemisphere 6.8
2824 Male, age 61, right hemisphere 3.8
1783 Male, age 74, unknown 3.1
2732 Male, age 80, right hemisphere 1.5
1806 Female, age 85, left hemisphere 1.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 3.2
1812 Female, age 91, both hemispheres 4.9
2195 Female, age 85, both hemispheres 4.9
2029 Male, age 61, right hemisphere 4.1
2775 Male, age 80, right hemisphere 2.2
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 1.9
1846 Male, age 80, right hemisphere 2.8
2487 Female, age 94, left hemisphere 2.1
2856 Male, age 75, right hemisphere 1.6
1998 Female, age 91, both hemispheres 1.1
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 3.4
1960 Male, age 74, unknown 10.8
2031 Female, age 72, unknown 4.9
2009 Female, age 91, both hemispheres 3.4
2059 Female, age 85, both hemispheres 2.6
2629 Female, age 94, right hemisphere 1.8
2394 Male, age 61, left hemisphere 0.3
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.1
Samples: 246

Max nTPM: 34.4
Min nTPM: 0.0
Std nTPM: 2.5
Median nTPM: 0.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 34.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 10.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 10.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 8.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 5.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 4.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 4.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 3.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 29.6
Min nTPM: 0.1
Std nTPM: 6.3
Median nTPM: 7.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 29.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 28.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 27.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 26.8
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 25.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 25.3
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 22.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 22.0
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 21.8
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 21.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 21.5
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Brain - Putamen (basal ganglia)
Average nTPM: 1.1
Samples: 205

Max nTPM: 10.5
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 0.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 10.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 8.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 7.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 7.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 6.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 4.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 4.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 4.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 4.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 4.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.7
FF:10164-103B2 76 years, female 7.7
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 10.8
FF:10037-101F1 23-56 years, mixed 10.8
Putamen
Scaled Tags Per Million: 13.2
FF:10176-103C5 60 years, female 13.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.8
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.3
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.1
Sample A Female 1.2
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.3
Septum
nTPM: 3.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 1.8
Sample C Male 9.0
Sample D Male 2.2
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 0.6
Sample A Female 0.8
Sample B Female 1.0
Sample C Male 4.8
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.8
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.3
Sample A Male 2.3
Sample B Male 3.1
Sample C Female 2.3
Sample D Female 3.5
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.4
Sample A Male 12.1
Sample B Male 8.4
Sample C Female 11.0
Sample D Female 8.6
Ventral forebrain
nTPM: 7.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.3
Sample A Male 5.3
Sample B Male 11.1
Sample C Female 7.8
Sample D Female 7.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
72283804 Antisense, RP_051027_01_B11, Mouse strain C57BL/6J (56 days, male) 0.2
69540435 Antisense, RP_050426_01_G07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.4
72283804 Antisense, RP_051027_01_B11, Mouse strain C57BL/6J (56 days, male) 0.5
69540435 Antisense, RP_050426_01_G07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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