MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:42.1 nTPM
FANTOM5:212.4 Scaled Tags Per Million
Pig:92.0 nTPM
Mouse:88.2 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.5
2586 Male, age 75, left hemisphere 57.9
2019 Male, age 18, unknown 54.0
2828 Female, age 72, unknown 49.1
1833 Male, age 53, unknown 44.3
2411 Female, age 72, unknown 44.1
1827 Male, age 72, unknown 43.4
2219 Male, age 76, both hemispheres 43.2
1830 Male, age 51, unknown 40.8
2666 Male, age 74, left hemisphere 39.3
1870 Female, age 42, unknown 38.7
Dorsal raphe nucleus
nTPM: 40.5
1828 Male, age 53, unknown 50.7
2047 Male, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 40.7
2016 Female, age 72, unknown 35.6
2298 Female, age 72, unknown 34.1
Inferior colliculus
nTPM: 43.5
1890 Male, age 53, unknown 47.9
2097 Female, age 72, unknown 46.8
1848 Female, age 42, unknown 42.0
2849 Male, age 72, unknown 37.2
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Pedunculopontine tegmental nucleus
nTPM: 40.5
2334 Male, age 80, both hemispheres 41.2
2338 Male, age 61, both hemispheres 40.8
1921 Female, age 85, both hemispheres 39.4
Periaquaductal grey, anterior
nTPM: 38.7
2502 Female, age 75, unknown 44.9
1947 Male, age 18, unknown 36.6
1795 Male, age 51, unknown 34.6
Periaquaductal grey, dorsal
nTPM: 32.1
2464 Female, age 72, unknown 39.6
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 27.3
2850 Male, age 76, both hemispheres 27.3
Periaquaductal grey, lateral
nTPM: 31.5
2053 Male, age 18, unknown 34.6
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 28.7
Pretectal area
nTPM: 43.5
1817 Female, age 42, unknown 58.4
1816 Male, age 51, unknown 57.3
1944 Female, age 72, unknown 56.2
2007 Male, age 72, unknown 51.5
1815 Male, age 53, unknown 47.3
2667 Female, age 75, unknown 45.7
2407 Male, age 75, both hemispheres 38.5
2825 Male, age 18, unknown 33.2
2273 Male, age 74, both hemispheres 31.4
2316 Male, age 76, right hemisphere 30.1
2224 Female, age 72, unknown 29.1
Red nucleus
nTPM: 48.0
1821 Female, age 72, unknown 53.7
1865 Male, age 51, unknown 51.8
2785 Male, age 18, unknown 51.2
1954 Female, age 42, unknown 49.2
2227 Male, age 72, unknown 49.0
2588 Male, age 74, left hemisphere 48.9
2769 Male, age 72, unknown 47.7
2823 Male, age 76, right hemisphere 47.6
2503 Female, age 72, unknown 47.0
1904 Male, age 53, unknown 45.1
2584 Male, age 75, left hemisphere 44.6
2725 Female, age 75, unknown 40.4
Substantia nigra
nTPM: 48.3
1916 Female, age 42, unknown 56.8
1941 Male, age 53, unknown 52.8
2665 Male, age 74, both hemispheres 51.1
2583 Male, age 75, right hemisphere 50.1
1889 Female, age 72, unknown 49.8
1851 Male, age 51, unknown 48.9
2590 Female, age 75, unknown 44.2
2241 Male, age 72, unknown 44.0
2699 Male, age 18, unknown 43.2
2409 Female, age 72, unknown 41.7
Superior colliculus
nTPM: 41.5
2087 Female, age 72, unknown 52.5
2664 Male, age 75, both hemispheres 45.5
2261 Male, age 18, unknown 43.6
2668 Female, age 75, unknown 42.5
1913 Female, age 42, unknown 40.8
1995 Male, age 72, unknown 39.9
1895 Male, age 76, right hemisphere 38.4
2587 Male, age 74, left hemisphere 37.7
1796 Male, age 53, unknown 36.9
1839 Male, age 51, unknown 36.7
Ventral tegmental area
nTPM: 42.8
2410 Female, age 72, unknown 50.1
2223 Female, age 72, unknown 49.2
2218 Male, age 76, both hemispheres 43.9
1915 Female, age 42, unknown 40.5
1942 Male, age 51, unknown 38.9
2021 Male, age 53, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 139

Max nTPM: 65.7
Min nTPM: 24.6
Std nTPM: 7.5
Median nTPM: 42.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 65.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 59.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 57.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 54.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 53.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 212.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 212.4
FF:10158-103A5 76 years, female 212.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.0
Pig sample Sample description nTPM
Midbrain
nTPM: 92.0
Samples: 4

Max nTPM: 121.2
Min nTPM: 73.1
Sample A Female 121.2
Sample B Female 77.5
Sample C Male 96.2
Sample D Male 73.1
Periaqueductal gray
nTPM: 78.7
Samples: 3

Max nTPM: 84.0
Min nTPM: 74.5
Sample B Female 84.0
Sample C Male 77.5
Sample D Male 74.5
Substantia nigra
nTPM: 79.2
Samples: 4

Max nTPM: 100.1
Min nTPM: 58.7
Sample A Female 74.2
Sample B Female 58.7
Sample C Male 83.6
Sample D Male 100.1
Superior colliculi
nTPM: 77.4
Samples: 4

Max nTPM: 98.2
Min nTPM: 45.3
Sample A Female 68.3
Sample B Female 45.3
Sample C Male 97.7
Sample D Male 98.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.2
Samples: 4

Max nTPM: 93.1
Min nTPM: 79.4
Sample A Male 79.4
Sample B Male 88.3
Sample C Female 93.1
Sample D Female 92.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69527980 Antisense, RP_050421_02_H03, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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