MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:16.7 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:11.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
2586 Male, age 75, left hemisphere 16.0
2411 Female, age 72, unknown 14.5
1827 Male, age 72, unknown 13.0
1833 Male, age 53, unknown 12.2
2828 Female, age 72, unknown 12.0
2666 Male, age 74, left hemisphere 10.9
1830 Male, age 51, unknown 10.8
1870 Female, age 42, unknown 10.3
2219 Male, age 76, both hemispheres 10.1
2019 Male, age 18, unknown 9.2
Dorsal raphe nucleus
nTPM: 24.5
2298 Female, age 72, unknown 36.4
2016 Female, age 72, unknown 29.5
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 20.7
2750 Male, age 76, both hemispheres 13.7
Inferior colliculus
nTPM: 14.4
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 14.8
2849 Male, age 72, unknown 13.7
1848 Female, age 42, unknown 11.1
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Pedunculopontine tegmental nucleus
nTPM: 11.9
2334 Male, age 80, both hemispheres 13.3
1921 Female, age 85, both hemispheres 12.6
2338 Male, age 61, both hemispheres 9.8
Periaquaductal grey, anterior
nTPM: 15.9
1795 Male, age 51, unknown 16.8
2502 Female, age 75, unknown 15.6
1947 Male, age 18, unknown 15.4
Periaquaductal grey, dorsal
nTPM: 22.5
2850 Male, age 76, both hemispheres 29.1
1840 Male, age 53, unknown 21.2
2464 Female, age 72, unknown 20.5
1831 Male, age 72, unknown 19.1
Periaquaductal grey, lateral
nTPM: 21.0
2140 Male, age 76, both hemispheres 24.8
2272 Male, age 74, both hemispheres 19.1
2053 Male, age 18, unknown 18.9
Pretectal area
nTPM: 12.1
2273 Male, age 74, both hemispheres 19.5
2224 Female, age 72, unknown 17.0
2825 Male, age 18, unknown 16.6
2407 Male, age 75, both hemispheres 13.5
2316 Male, age 76, right hemisphere 12.5
2667 Female, age 75, unknown 10.3
1816 Male, age 51, unknown 9.2
1815 Male, age 53, unknown 9.1
2007 Male, age 72, unknown 8.8
1944 Female, age 72, unknown 8.7
1817 Female, age 42, unknown 7.5
Red nucleus
nTPM: 10.6
2725 Female, age 75, unknown 15.5
2584 Male, age 75, left hemisphere 13.0
2823 Male, age 76, right hemisphere 11.0
2503 Female, age 72, unknown 10.9
2227 Male, age 72, unknown 10.7
1821 Female, age 72, unknown 10.1
1954 Female, age 42, unknown 10.0
2769 Male, age 72, unknown 10.0
1904 Male, age 53, unknown 9.8
2588 Male, age 74, left hemisphere 9.0
1865 Male, age 51, unknown 8.8
2785 Male, age 18, unknown 8.1
Substantia nigra
nTPM: 16.1
1916 Female, age 42, unknown 21.1
2699 Male, age 18, unknown 19.8
1851 Male, age 51, unknown 18.5
1941 Male, age 53, unknown 18.2
2590 Female, age 75, unknown 16.1
2583 Male, age 75, right hemisphere 15.8
2241 Male, age 72, unknown 15.3
2665 Male, age 74, both hemispheres 14.3
2409 Female, age 72, unknown 11.3
1889 Female, age 72, unknown 10.7
Superior colliculus
nTPM: 12.5
1995 Male, age 72, unknown 19.5
2664 Male, age 75, both hemispheres 15.4
1796 Male, age 53, unknown 12.9
2261 Male, age 18, unknown 12.6
1913 Female, age 42, unknown 12.3
1839 Male, age 51, unknown 11.9
2587 Male, age 74, left hemisphere 11.8
2087 Female, age 72, unknown 10.9
2668 Female, age 75, unknown 9.1
1895 Male, age 76, right hemisphere 8.2
Ventral tegmental area
nTPM: 17.2
1942 Male, age 51, unknown 23.0
1915 Female, age 42, unknown 18.4
2021 Male, age 53, unknown 18.4
2223 Female, age 72, unknown 16.1
2410 Female, age 72, unknown 14.1
2218 Male, age 76, both hemispheres 13.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 51.6
Min nTPM: 2.7
Std nTPM: 8.3
Median nTPM: 15.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 50.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 41.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 35.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 34.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 34.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 33.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 33.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 30.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 30.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.1
FF:10158-103A5 76 years, female 16.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Midbrain
nTPM: 11.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 7.9
Sample A Female 15.5
Sample B Female 10.4
Sample C Male 10.0
Sample D Male 7.9
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 11.8
Min nTPM: 9.2
Sample B Female 11.8
Sample C Male 10.6
Sample D Male 9.2
Substantia nigra
nTPM: 11.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 12.1
Sample C Male 11.6
Sample D Male 12.0
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.8
Sample A Female 7.9
Sample B Female 7.8
Sample C Male 9.3
Sample D Male 9.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.