MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA:10.5 nTPM
GTEx:2.4 nTPM
FANTOM5:13.4 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:8.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.4
2411 Female, age 72, unknown 11.5
1830 Male, age 51, unknown 10.9
1833 Male, age 53, unknown 9.5
2019 Male, age 18, unknown 9.2
1870 Female, age 42, unknown 7.0
2219 Male, age 76, both hemispheres 6.1
2828 Female, age 72, unknown 3.4
2666 Male, age 74, left hemisphere 3.0
2586 Male, age 75, left hemisphere 2.1
1827 Male, age 72, unknown 0.9
Dorsal raphe nucleus
nTPM: 2.8
2750 Male, age 76, both hemispheres 9.2
1828 Male, age 53, unknown 2.9
2016 Female, age 72, unknown 1.7
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 4.6
1890 Male, age 53, unknown 6.6
1848 Female, age 42, unknown 5.1
2849 Male, age 72, unknown 4.1
2097 Female, age 72, unknown 2.7
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 4.0
1921 Female, age 85, both hemispheres 6.8
2334 Male, age 80, both hemispheres 3.9
2338 Male, age 61, both hemispheres 1.3
Periaquaductal grey, anterior
nTPM: 2.0
2502 Female, age 75, unknown 6.1
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.5
2464 Female, age 72, unknown 2.2
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 1.5
2272 Male, age 74, both hemispheres 2.4
2053 Male, age 18, unknown 2.1
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 3.1
2667 Female, age 75, unknown 6.4
2407 Male, age 75, both hemispheres 5.8
1944 Female, age 72, unknown 4.7
2316 Male, age 76, right hemisphere 4.3
2007 Male, age 72, unknown 4.2
1815 Male, age 53, unknown 3.8
2224 Female, age 72, unknown 1.5
2825 Male, age 18, unknown 1.3
2273 Male, age 74, both hemispheres 0.9
1817 Female, age 42, unknown 0.8
1816 Male, age 51, unknown 0.7
Red nucleus
nTPM: 10.5
1904 Male, age 53, unknown 15.6
1865 Male, age 51, unknown 15.5
2823 Male, age 76, right hemisphere 13.8
2503 Female, age 72, unknown 13.2
2785 Male, age 18, unknown 13.2
1821 Female, age 72, unknown 12.2
2588 Male, age 74, left hemisphere 9.3
2227 Male, age 72, unknown 9.0
2769 Male, age 72, unknown 8.8
1954 Female, age 42, unknown 8.1
2584 Male, age 75, left hemisphere 7.0
2725 Female, age 75, unknown 0.0
Substantia nigra
nTPM: 3.7
2409 Female, age 72, unknown 10.6
2241 Male, age 72, unknown 8.9
2583 Male, age 75, right hemisphere 6.2
1889 Female, age 72, unknown 4.3
1851 Male, age 51, unknown 1.8
1941 Male, age 53, unknown 1.5
2699 Male, age 18, unknown 1.3
1916 Female, age 42, unknown 1.0
2590 Female, age 75, unknown 1.0
2665 Male, age 74, both hemispheres 0.0
Superior colliculus
nTPM: 5.7
1913 Female, age 42, unknown 12.5
2668 Female, age 75, unknown 10.9
1995 Male, age 72, unknown 8.5
2587 Male, age 74, left hemisphere 6.6
1895 Male, age 76, right hemisphere 6.5
1839 Male, age 51, unknown 4.3
2261 Male, age 18, unknown 4.3
1796 Male, age 53, unknown 1.7
2087 Female, age 72, unknown 1.4
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 3.9
2410 Female, age 72, unknown 7.6
2223 Female, age 72, unknown 6.2
2218 Male, age 76, both hemispheres 4.9
1942 Male, age 51, unknown 4.0
1915 Female, age 42, unknown 0.9
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 4.7
Min nTPM: 1.3
Std nTPM: 0.6
Median nTPM: 2.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 4.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 3.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 3.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 3.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 3.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 3.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.4
FF:10158-103A5 76 years, female 13.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.2
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 11.2
Sample C Male 11.9
Sample D Male 12.2
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 10.9
Min nTPM: 8.6
Sample B Female 9.1
Sample C Male 10.9
Sample D Male 8.6
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 14.6
Min nTPM: 5.5
Sample A Female 14.2
Sample B Female 8.5
Sample C Male 14.6
Sample D Male 5.5
Superior colliculi
nTPM: 11.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.9
Sample A Female 12.2
Sample B Female 7.9
Sample C Male 13.4
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 8.7
Sample C Female 9.3
Sample D Female 8.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70194612 Antisense, RP_050517_01_G03, Mouse strain C57BL/6J (56 days, male) 0.5
74957910 Antisense, RP_060315_05_A07, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.