BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.1 nTPM
HPA:1.1 nTPM
GTEx:1.9 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:6.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA019122
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.0
2290 Female, age 72, unknown 1.4
2846 Female, age 79, unknown 1.2
1854 Male, age 80, left hemisphere 1.1
1857 Female, age 85, left hemisphere 1.0
1781 Male, age 74, unknown 0.9
2288 Male, age 75, left hemisphere 0.9
2289 Male, age 61, right hemisphere 0.9
2481 Female, age 94, left hemisphere 0.5
Claustrum
nTPM: 0.9
2196 Female, age 79, unknown 1.0
2198 Male, age 80, both hemispheres 1.0
2568 Male, age 61, both hemispheres 1.0
1956 Male, age 74, unknown 0.9
2284 Female, age 91, both hemispheres 0.8
2292 Female, age 85, both hemispheres 0.8
2392 Female, age 94, both hemispheres 0.8
2491 Male, age 75, both hemispheres 0.8
2645 Female, age 72, unknown 0.8
Globus pallidus, externus
nTPM: 0.8
2395 Male, age 75, both hemispheres 0.9
2772 Female, age 79, unknown 0.8
1996 Male, age 80, right hemisphere 0.7
2567 Female, age 72, unknown 0.7
2646 Male, age 61, right hemisphere 0.7
Globus pallidus, internus
nTPM: 0.8
2037 Male, age 80, right hemisphere 0.9
2111 Female, age 85, right hemisphere 0.9
1818 Male, age 74, unknown 0.8
2287 Male, age 75, right hemisphere 0.8
2483 Female, age 94, right hemisphere 0.8
2566 Female, age 72, unknown 0.8
2778 Female, age 91, both hemispheres 0.8
Nucleus accumbens
nTPM: 1.1
1783 Male, age 74, unknown 1.3
2732 Male, age 80, right hemisphere 1.2
2824 Male, age 61, right hemisphere 1.2
1806 Female, age 85, left hemisphere 1.1
1856 Female, age 91, right hemisphere 1.1
2698 Female, age 72, unknown 1.1
2286 Male, age 75, left hemisphere 1.0
2391 Female, age 94, left hemisphere 0.9
Nucleus basalis of Meynert
nTPM: 0.9
2821 Male, age 75, both hemispheres 1.0
2393 Male, age 80, right hemisphere 0.9
2484 Female, age 94, left hemisphere 0.8
2569 Male, age 61, both hemispheres 0.7
Nucleus of the diagonal band
nTPM: 0.9
1812 Female, age 91, both hemispheres 1.2
1979 Male, age 74, unknown 0.9
2195 Female, age 85, both hemispheres 0.9
2029 Male, age 61, right hemisphere 0.8
2775 Male, age 80, right hemisphere 0.8
Olfactory tubercle
nTPM: 0.9
1846 Male, age 80, right hemisphere 0.9
1998 Female, age 91, both hemispheres 0.9
2487 Female, age 94, left hemisphere 0.9
2856 Male, age 75, right hemisphere 0.8
Putamen
nTPM: 1.0
2647 Male, age 75, left hemisphere 1.2
1829 Male, age 74, unknown 1.1
1937 Female, age 91, right hemisphere 1.0
2466 Female, age 79, unknown 1.0
2482 Female, age 94, left hemisphere 1.0
1838 Male, age 80, right hemisphere 0.8
2489 Female, age 72, unknown 0.7
Septal nuclei
nTPM: 0.9
2009 Female, age 91, both hemispheres 1.2
2394 Male, age 61, left hemisphere 1.0
2629 Female, age 94, right hemisphere 1.0
2059 Female, age 85, both hemispheres 0.9
1960 Male, age 74, unknown 0.8
2031 Female, age 72, unknown 0.8
2199 Male, age 80, right hemisphere 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 6.2
Min nTPM: 0.0
Std nTPM: 1.0
Median nTPM: 1.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 6.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 5.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 5.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 5.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 4.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 4.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 4.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 3.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 11.6
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 1.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.6
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 8.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 5.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 4.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 4.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 4.5
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 4.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.2
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 4.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 3.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 3.8
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Brain - Putamen (basal ganglia)
Average nTPM: 1.7
Samples: 205

Max nTPM: 4.7
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 1.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 4.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 4.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 3.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 3.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 3.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 3.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 3.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 3.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 3.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.0
FF:10164-103B2 76 years, female 13.0
Globus pallidus
Scaled Tags Per Million: 10.8
FF:10161-103A8 76 years, female 13.7
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 14.7
FF:10037-101F1 23-56 years, mixed 14.7
Putamen
Scaled Tags Per Million: 18.5
FF:10176-103C5 60 years, female 18.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Caudate
nTPM: 5.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.3
Sample A Female 6.5
Sample B Female 5.3
Sample C Male 5.5
Sample D Male 6.3
Putamen
nTPM: 6.4
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.0
Sample C Male 6.0
Sample D Male 6.4
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.4
Sample A Female 6.2
Sample B Female 6.1
Sample C Male 5.4
Sample D Male 5.5
Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.0
Sample A Female 6.9
Sample B Female 6.2
Sample C Male 5.0
Sample D Male 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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