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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:127.3 nTPM
GTEx:303.7 nTPM
FANTOM5:448.7 Scaled Tags Per Million
Pig:109.1 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 127.3
Sample id Sample description nTPM
Putamen
nTPM: 127.3
1937 Female, age 91, right hemisphere 168.8
1838 Male, age 80, right hemisphere 150.2
2647 Male, age 75, left hemisphere 133.5
2489 Female, age 72, unknown 121.7
1829 Male, age 74, unknown 113.1
2466 Female, age 79, unknown 110.2
2482 Female, age 94, left hemisphere 93.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 303.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 303.7
Samples: 205

Max nTPM: 979.3
Min nTPM: 37.7
Std nTPM: 160.1
Median nTPM: 286.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 979.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 852.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 669.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 668.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 652.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 632.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 623.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 602.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 600.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 600.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 598.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 576.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 561.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 553.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 553.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 550.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 531.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 528.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 527.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 522.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 517.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 512.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 512.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 509.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 480.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 479.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 479.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 477.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 476.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 471.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 467.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 464.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 460.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 456.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 456.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 453.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 451.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 449.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 448.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 448.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 444.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 442.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 436.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 436.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 433.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 432.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 432.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 427.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 421.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 420.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 420.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 416.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 412.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 409.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 404.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 393.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 386.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 383.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 381.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 381.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 380.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 378.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 376.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 368.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 367.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 365.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 364.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 362.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 361.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 355.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 354.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 353.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 347.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 346.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 346.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 345.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 345.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 345.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 344.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 338.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 337.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 332.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 331.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 331.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 330.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 330.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 323.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 323.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 322.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 320.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 310.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 308.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 308.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 304.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 299.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 299.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 299.1
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 297.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 297.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 296.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 292.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 291.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 286.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 279.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 276.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 274.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 272.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 268.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 266.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 266.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 262.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 260.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 252.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 252.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 248.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 248.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 246.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 243.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 240.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 240.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 238.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 238.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 236.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 234.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 232.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 230.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 230.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 230.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 229.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 220.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 218.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 218.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 217.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 215.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 210.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 208.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 208.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 206.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 205.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 202.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 201.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 199.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 197.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 196.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 196.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 192.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 191.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 189.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 189.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 188.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 185.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 185.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 184.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 183.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 181.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 180.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 178.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 177.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 170.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 168.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 168.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 168.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 165.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 164.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 162.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 161.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 160.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 151.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 149.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 147.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 145.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 145.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 144.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 143.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 142.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 141.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 137.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 137.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 132.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 131.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 131.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 128.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 128.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 126.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 119.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 109.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 106.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 102.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 100.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 92.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 90.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 89.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 88.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 88.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 86.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 84.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 83.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 74.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 74.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 65.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 54.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 50.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 42.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 40.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 37.7
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 448.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 448.7
FF:10176-103C5 60 years, female 448.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.1
Pig sample Sample description nTPM
Putamen
nTPM: 109.2
Samples: 4

Max nTPM: 145.8
Min nTPM: 43.2
Sample A Female 43.2
Sample B Female 115.2
Sample C Male 145.8
Sample D Male 132.4

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