MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:123.9 nTPM
HPA:123.9 nTPM
GTEx:168.4 nTPM
FANTOM5:261.2 Scaled Tags Per Million
Pig:155.8 nTPM
Mouse:385.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.0
1870 Female, age 42, unknown 123.5
2019 Male, age 18, unknown 121.8
1830 Male, age 51, unknown 114.9
1833 Male, age 53, unknown 113.2
2411 Female, age 72, unknown 112.6
2586 Male, age 75, left hemisphere 110.0
2828 Female, age 72, unknown 106.7
1827 Male, age 72, unknown 105.5
2219 Male, age 76, both hemispheres 101.8
2666 Male, age 74, left hemisphere 100.3
Dorsal raphe nucleus
nTPM: 110.9
1828 Male, age 53, unknown 119.0
2750 Male, age 76, both hemispheres 112.5
2016 Female, age 72, unknown 111.1
2298 Female, age 72, unknown 106.1
2047 Male, age 72, unknown 106.0
Inferior colliculus
nTPM: 113.4
1890 Male, age 53, unknown 119.4
1848 Female, age 42, unknown 114.4
2097 Female, age 72, unknown 114.3
2849 Male, age 72, unknown 105.5
Median raphe nucleus
nTPM: 103.8
2220 Male, age 76, midline 103.8
Pedunculopontine tegmental nucleus
nTPM: 107.3
1921 Female, age 85, both hemispheres 109.5
2334 Male, age 80, both hemispheres 107.3
2338 Male, age 61, both hemispheres 105.2
Periaquaductal grey, anterior
nTPM: 104.8
1947 Male, age 18, unknown 107.0
2502 Female, age 75, unknown 106.7
1795 Male, age 51, unknown 100.6
Periaquaductal grey, dorsal
nTPM: 105.0
2850 Male, age 76, both hemispheres 108.2
2464 Female, age 72, unknown 106.6
1831 Male, age 72, unknown 103.8
1840 Male, age 53, unknown 101.4
Periaquaductal grey, lateral
nTPM: 105.8
2272 Male, age 74, both hemispheres 106.6
2140 Male, age 76, both hemispheres 105.6
2053 Male, age 18, unknown 105.1
Pretectal area
nTPM: 109.3
2007 Male, age 72, unknown 115.8
1817 Female, age 42, unknown 115.0
2273 Male, age 74, both hemispheres 111.7
2224 Female, age 72, unknown 110.7
2667 Female, age 75, unknown 110.0
1815 Male, age 53, unknown 109.1
2316 Male, age 76, right hemisphere 107.5
2407 Male, age 75, both hemispheres 107.4
1944 Female, age 72, unknown 105.6
2825 Male, age 18, unknown 104.8
1816 Male, age 51, unknown 104.5
Red nucleus
nTPM: 123.9
1821 Female, age 72, unknown 141.9
2823 Male, age 76, right hemisphere 135.1
1865 Male, age 51, unknown 132.2
1954 Female, age 42, unknown 129.6
1904 Male, age 53, unknown 126.9
2769 Male, age 72, unknown 125.9
2227 Male, age 72, unknown 125.2
2503 Female, age 72, unknown 122.5
2785 Male, age 18, unknown 118.4
2725 Female, age 75, unknown 114.4
2588 Male, age 74, left hemisphere 109.7
2584 Male, age 75, left hemisphere 104.6
Substantia nigra
nTPM: 110.4
1889 Female, age 72, unknown 119.3
2241 Male, age 72, unknown 113.9
1851 Male, age 51, unknown 113.3
2699 Male, age 18, unknown 112.3
2409 Female, age 72, unknown 110.5
1916 Female, age 42, unknown 109.2
2583 Male, age 75, right hemisphere 109.0
2590 Female, age 75, unknown 108.8
1941 Male, age 53, unknown 108.6
2665 Male, age 74, both hemispheres 99.2
Superior colliculus
nTPM: 110.1
2587 Male, age 74, left hemisphere 115.4
1913 Female, age 42, unknown 115.3
1995 Male, age 72, unknown 115.1
2668 Female, age 75, unknown 114.1
1895 Male, age 76, right hemisphere 113.7
1839 Male, age 51, unknown 108.3
2664 Male, age 75, both hemispheres 106.9
2087 Female, age 72, unknown 104.9
2261 Male, age 18, unknown 104.2
1796 Male, age 53, unknown 103.1
Ventral tegmental area
nTPM: 109.2
2410 Female, age 72, unknown 115.5
2223 Female, age 72, unknown 114.7
1915 Female, age 42, unknown 108.6
1942 Male, age 51, unknown 107.1
2218 Male, age 76, both hemispheres 104.9
2021 Male, age 53, unknown 104.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 168.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.4
Samples: 139

Max nTPM: 334.7
Min nTPM: 82.2
Std nTPM: 44.9
Median nTPM: 162.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 334.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 274.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 268.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 264.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 255.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 252.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 251.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 244.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 244.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 241.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 240.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 261.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 261.2
FF:10158-103A5 76 years, female 261.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 155.8
Pig sample Sample description nTPM
Midbrain
nTPM: 155.8
Samples: 4

Max nTPM: 266.6
Min nTPM: 101.9
Sample A Female 266.6
Sample B Female 135.3
Sample C Male 119.3
Sample D Male 101.9
Periaqueductal gray
nTPM: 98.9
Samples: 3

Max nTPM: 107.3
Min nTPM: 92.3
Sample B Female 107.3
Sample C Male 92.3
Sample D Male 97.2
Substantia nigra
nTPM: 137.9
Samples: 4

Max nTPM: 179.3
Min nTPM: 105.4
Sample A Female 179.3
Sample B Female 122.4
Sample C Male 105.4
Sample D Male 144.6
Superior colliculi
nTPM: 153.1
Samples: 4

Max nTPM: 185.1
Min nTPM: 135.0
Sample A Female 185.1
Sample B Female 139.9
Sample C Male 152.4
Sample D Male 135.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 385.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 385.7
Samples: 4

Max nTPM: 400.7
Min nTPM: 360.3
Sample A Male 400.7
Sample B Male 360.3
Sample C Female 382.5
Sample D Female 399.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2067 Antisense, RP_040604_01_E04, Mouse strain C57BL/6J (56 days, male) 0.8
100144162 Antisense, RP_110421_02_A07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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