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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:105.9 nTPM
HPA:105.9 nTPM
GTEx:107.8 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Pig:80.0 nTPM
Mouse:315.9 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 105.9
Sample id Sample description nTPM
Amygdala
nTPM: 105.9
2814 Male, age 76, right hemisphere 119.0
2695 Female, age 67, right hemisphere 107.5
2514 Male, age 75, right hemisphere 106.3
1987 Female, age 91, left hemisphere 100.9
2517 Female, age 94, left hemisphere 96.2
Basal amygdala
nTPM: 95.8
1955 Male, age 76, both hemispheres 103.1
2609 Male, age 75, right hemisphere 99.6
2110 Male, age 80, left hemisphere 95.9
2685 Female, age 94, left hemisphere 94.3
2243 Female, age 91, right hemisphere 91.5
2827 Female, age 67, right hemisphere 90.2
Central amygdala
nTPM: 101.1
1905 Male, age 76, both hemispheres 112.5
2515 Male, age 75, right hemisphere 101.8
2826 Female, age 94, left hemisphere 99.6
2701 Female, age 91, right hemisphere 96.5
2239 Male, age 80, left hemisphere 95.1
Corticomedial amygdala
nTPM: 96.3
2428 Male, age 75, right hemisphere 102.2
2240 Male, age 76, both hemispheres 97.9
2829 Male, age 80, left hemisphere 97.9
2429 Female, age 94, left hemisphere 96.5
2242 Female, age 91, right hemisphere 92.5
2535 Female, age 67, right hemisphere 90.5
Lateral amygdala
nTPM: 99.3
1883 Male, age 76, both hemispheres 115.5
2516 Male, age 75, right hemisphere 102.9
2534 Female, age 94, left hemisphere 95.3
2256 Male, age 80, left hemisphere 94.9
2830 Female, age 67, right hemisphere 94.6
2255 Female, age 91, right hemisphere 92.8
Stria terminalis, bed nucleus
nTPM: 94.8
1974 Female, age 91, both hemispheres 98.1
2486 Female, age 94, both hemispheres 94.0
2201 Male, age 74, unknown 92.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 107.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 107.8
Samples: 152

Max nTPM: 313.2
Min nTPM: 37.4
Std nTPM: 37.8
Median nTPM: 102.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 313.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 300.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 234.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 230.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 203.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 178.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 168.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 160.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 153.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 152.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 149.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 146.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 136.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 136.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 135.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 132.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 130.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 129.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 128.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 126.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 126.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 126.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 125.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 125.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 123.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 119.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 119.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 118.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 116.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 115.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 114.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 113.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 112.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 112.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 111.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 110.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 109.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 109.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 108.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 108.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 108.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 107.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 107.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 107.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 107.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 106.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 105.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 105.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 103.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 103.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 102.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 102.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 101.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 97.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 96.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 95.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 95.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 94.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 93.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 93.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 92.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 88.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 88.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 88.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 85.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 84.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 84.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 83.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 79.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 78.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 77.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 76.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 76.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 75.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 73.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 73.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 68.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 66.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 65.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 64.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 61.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 53.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 37.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 99.3
FF:10151-102I7 76 years, female 99.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.0
Pig sample Sample description nTPM
Amygdala
nTPM: 80.0
Samples: 4

Max nTPM: 100.1
Min nTPM: 61.3
Sample A Female 100.1
Sample B Female 90.5
Sample C Male 68.0
Sample D Male 61.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 315.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 315.9
Samples: 4

Max nTPM: 359.4
Min nTPM: 288.0
Sample A Male 288.0
Sample B Male 301.3
Sample C Female 359.4
Sample D Female 314.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
2067 Antisense, RP_040604_01_E04, Mouse strain C57BL/6J (56 days, male) 1.2
100144162 Antisense, RP_110421_02_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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