MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:41.3 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:69.4 nTPM
Mouse:212.3 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2586 Male, age 75, left hemisphere 40.8
2666 Male, age 74, left hemisphere 39.5
2019 Male, age 18, unknown 39.3
1827 Male, age 72, unknown 38.9
2219 Male, age 76, both hemispheres 36.7
2411 Female, age 72, unknown 36.4
1870 Female, age 42, unknown 33.1
1833 Male, age 53, unknown 31.8
2828 Female, age 72, unknown 31.8
1830 Male, age 51, unknown 30.0
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 40.0
1828 Male, age 53, unknown 39.6
2750 Male, age 76, both hemispheres 34.8
2016 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 37.0
2097 Female, age 72, unknown 46.1
1890 Male, age 53, unknown 38.0
1848 Female, age 42, unknown 34.2
2849 Male, age 72, unknown 29.6
Median raphe nucleus
nTPM: 37.9
2220 Male, age 76, midline 37.9
Pedunculopontine tegmental nucleus
nTPM: 33.0
1921 Female, age 85, both hemispheres 39.6
2334 Male, age 80, both hemispheres 34.6
2338 Male, age 61, both hemispheres 24.6
Periaquaductal grey, anterior
nTPM: 39.2
1947 Male, age 18, unknown 40.2
2502 Female, age 75, unknown 38.8
1795 Male, age 51, unknown 38.6
Periaquaductal grey, dorsal
nTPM: 34.9
1840 Male, age 53, unknown 36.4
1831 Male, age 72, unknown 35.9
2850 Male, age 76, both hemispheres 33.8
2464 Female, age 72, unknown 33.4
Periaquaductal grey, lateral
nTPM: 31.8
2053 Male, age 18, unknown 32.3
2272 Male, age 74, both hemispheres 31.6
2140 Male, age 76, both hemispheres 31.5
Pretectal area
nTPM: 41.6
1816 Male, age 51, unknown 55.5
1944 Female, age 72, unknown 55.2
2007 Male, age 72, unknown 50.2
1817 Female, age 42, unknown 49.2
1815 Male, age 53, unknown 47.1
2273 Male, age 74, both hemispheres 37.2
2224 Female, age 72, unknown 36.7
2667 Female, age 75, unknown 36.6
2825 Male, age 18, unknown 31.5
2407 Male, age 75, both hemispheres 30.8
2316 Male, age 76, right hemisphere 27.9
Red nucleus
nTPM: 32.9
1821 Female, age 72, unknown 41.3
2785 Male, age 18, unknown 36.3
2725 Female, age 75, unknown 36.2
2584 Male, age 75, left hemisphere 34.7
1954 Female, age 42, unknown 32.5
2503 Female, age 72, unknown 32.2
1904 Male, age 53, unknown 31.4
1865 Male, age 51, unknown 30.9
2227 Male, age 72, unknown 30.5
2588 Male, age 74, left hemisphere 30.5
2769 Male, age 72, unknown 30.5
2823 Male, age 76, right hemisphere 27.6
Substantia nigra
nTPM: 46.2
1916 Female, age 42, unknown 60.5
2241 Male, age 72, unknown 52.4
1851 Male, age 51, unknown 50.1
1889 Female, age 72, unknown 49.0
2409 Female, age 72, unknown 46.7
1941 Male, age 53, unknown 44.8
2665 Male, age 74, both hemispheres 42.3
2583 Male, age 75, right hemisphere 39.9
2699 Male, age 18, unknown 38.9
2590 Female, age 75, unknown 37.0
Superior colliculus
nTPM: 37.2
2668 Female, age 75, unknown 45.8
2087 Female, age 72, unknown 45.7
2261 Male, age 18, unknown 43.4
1796 Male, age 53, unknown 40.7
2664 Male, age 75, both hemispheres 34.4
2587 Male, age 74, left hemisphere 34.3
1895 Male, age 76, right hemisphere 32.7
1839 Male, age 51, unknown 32.5
1913 Female, age 42, unknown 32.2
1995 Male, age 72, unknown 30.8
Ventral tegmental area
nTPM: 40.5
2410 Female, age 72, unknown 48.3
1915 Female, age 42, unknown 43.7
2218 Male, age 76, both hemispheres 42.1
1942 Male, age 51, unknown 38.8
2223 Female, age 72, unknown 37.3
2021 Male, age 53, unknown 32.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.3
Samples: 139

Max nTPM: 97.4
Min nTPM: 16.9
Std nTPM: 13.3
Median nTPM: 38.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 94.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 75.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 65.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 63.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 63.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.4
Pig sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 94.7
Min nTPM: 55.9
Sample A Female 55.9
Sample B Female 56.6
Sample C Male 94.7
Sample D Male 70.4
Periaqueductal gray
nTPM: 48.4
Samples: 3

Max nTPM: 53.7
Min nTPM: 43.9
Sample B Female 47.6
Sample C Male 53.7
Sample D Male 43.9
Substantia nigra
nTPM: 56.2
Samples: 4

Max nTPM: 72.6
Min nTPM: 40.3
Sample A Female 72.6
Sample B Female 51.8
Sample C Male 59.9
Sample D Male 40.3
Superior colliculi
nTPM: 69.4
Samples: 4

Max nTPM: 81.9
Min nTPM: 60.8
Sample A Female 72.7
Sample B Female 60.8
Sample C Male 81.9
Sample D Male 62.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 212.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 212.3
Samples: 4

Max nTPM: 220.5
Min nTPM: 198.1
Sample A Male 198.1
Sample B Male 220.5
Sample C Female 219.8
Sample D Female 210.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
69782073 Antisense, RP_050505_02_C06, Mouse strain C57BL/6J (56 days, male) 14.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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