BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:64.1 nTPM
HPA:64.1 nTPM
GTEx:42.3 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:58.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041954
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 64.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2289 Male, age 61, right hemisphere 60.7
1781 Male, age 74, unknown 60.1
2290 Female, age 72, unknown 60.0
2288 Male, age 75, left hemisphere 58.7
2846 Female, age 79, unknown 55.8
1854 Male, age 80, left hemisphere 53.2
1857 Female, age 85, left hemisphere 52.1
2481 Female, age 94, left hemisphere 33.0
Claustrum
nTPM: 63.2
2645 Female, age 72, unknown 83.1
2568 Male, age 61, both hemispheres 82.6
2284 Female, age 91, both hemispheres 69.0
2491 Male, age 75, both hemispheres 65.0
2292 Female, age 85, both hemispheres 61.2
2198 Male, age 80, both hemispheres 57.3
2392 Female, age 94, both hemispheres 51.0
1956 Male, age 74, unknown 50.6
2196 Female, age 79, unknown 49.3
Globus pallidus, externus
nTPM: 49.1
2567 Female, age 72, unknown 70.1
2646 Male, age 61, right hemisphere 69.1
2772 Female, age 79, unknown 39.8
2395 Male, age 75, both hemispheres 33.9
1996 Male, age 80, right hemisphere 32.8
Globus pallidus, internus
nTPM: 42.5
2566 Female, age 72, unknown 56.8
2111 Female, age 85, right hemisphere 47.1
1818 Male, age 74, unknown 45.0
2037 Male, age 80, right hemisphere 41.2
2483 Female, age 94, right hemisphere 38.6
2778 Female, age 91, both hemispheres 38.2
2287 Male, age 75, right hemisphere 30.9
Nucleus accumbens
nTPM: 50.9
1783 Male, age 74, unknown 67.2
2824 Male, age 61, right hemisphere 59.5
2286 Male, age 75, left hemisphere 53.8
1806 Female, age 85, left hemisphere 51.1
1856 Female, age 91, right hemisphere 48.3
2732 Male, age 80, right hemisphere 45.0
2698 Female, age 72, unknown 44.5
2391 Female, age 94, left hemisphere 38.2
Nucleus basalis of Meynert
nTPM: 60.1
2569 Male, age 61, both hemispheres 75.0
2821 Male, age 75, both hemispheres 59.5
2484 Female, age 94, left hemisphere 53.7
2393 Male, age 80, right hemisphere 52.1
Nucleus of the diagonal band
nTPM: 60.2
2195 Female, age 85, both hemispheres 67.7
2029 Male, age 61, right hemisphere 66.1
2775 Male, age 80, right hemisphere 64.5
1812 Female, age 91, both hemispheres 52.2
1979 Male, age 74, unknown 50.6
Olfactory tubercle
nTPM: 64.1
2856 Male, age 75, right hemisphere 70.4
1998 Female, age 91, both hemispheres 69.7
2487 Female, age 94, left hemisphere 63.0
1846 Male, age 80, right hemisphere 53.2
Putamen
nTPM: 62.3
2647 Male, age 75, left hemisphere 85.1
2489 Female, age 72, unknown 71.6
1829 Male, age 74, unknown 63.7
2466 Female, age 79, unknown 61.0
1838 Male, age 80, right hemisphere 57.8
1937 Female, age 91, right hemisphere 57.0
2482 Female, age 94, left hemisphere 39.6
Septal nuclei
nTPM: 60.3
2059 Female, age 85, both hemispheres 68.3
1960 Male, age 74, unknown 68.2
2394 Male, age 61, left hemisphere 66.7
2009 Female, age 91, both hemispheres 56.3
2031 Female, age 72, unknown 54.8
2199 Male, age 80, right hemisphere 54.3
2629 Female, age 94, right hemisphere 53.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.7
Samples: 246

Max nTPM: 75.3
Min nTPM: 8.7
Std nTPM: 13.6
Median nTPM: 40.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 75.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 70.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 69.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 69.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 68.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 67.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 66.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 65.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 63.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 63.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 62.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.3
Samples: 246

Max nTPM: 77.2
Min nTPM: 6.9
Std nTPM: 13.7
Median nTPM: 43.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 77.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 76.3
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 72.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 71.6
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 70.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 69.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 69.8
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 69.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 68.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 68.0
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 67.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 39.3
Samples: 205

Max nTPM: 90.8
Min nTPM: 10.8
Std nTPM: 15.1
Median nTPM: 37.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 90.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 79.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 74.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 72.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 71.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 70.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 69.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 69.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 68.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 66.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 66.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.9
FF:10164-103B2 76 years, female 49.9
Globus pallidus
Scaled Tags Per Million: 26.9
FF:10161-103A8 76 years, female 34.8
FF:10175-103C4 60 years, female 18.9
Nucleus accumbens
Scaled Tags Per Million: 39.2
FF:10037-101F1 23-56 years, mixed 39.2
Putamen
Scaled Tags Per Million: 44.5
FF:10176-103C5 60 years, female 44.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Caudate
nTPM: 34.9
Samples: 4

Max nTPM: 38.6
Min nTPM: 30.6
Sample A Female 30.6
Sample B Female 37.9
Sample C Male 38.6
Sample D Male 32.3
Putamen
nTPM: 36.5
Samples: 4

Max nTPM: 44.6
Min nTPM: 28.8
Sample A Female 44.6
Sample B Female 28.8
Sample C Male 31.8
Sample D Male 40.7
Septum
nTPM: 36.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 34.4
Sample A Female 37.4
Sample B Female 34.5
Sample C Male 41.0
Sample D Male 34.4
Ventral pallidum
nTPM: 37.9
Samples: 4

Max nTPM: 50.0
Min nTPM: 31.4
Sample A Female 31.4
Sample B Female 33.5
Sample C Male 50.0
Sample D Male 36.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.5
Samples: 4

Max nTPM: 76.7
Min nTPM: 44.9
Sample A Male 57.6
Sample B Male 76.7
Sample C Female 44.9
Sample D Female 54.6
Septum
nTPM: 49.5
Samples: 4

Max nTPM: 64.7
Min nTPM: 40.8
Sample A Male 64.7
Sample B Male 44.8
Sample C Female 40.8
Sample D Female 47.6
Ventral forebrain
nTPM: 56.0
Samples: 4

Max nTPM: 64.7
Min nTPM: 46.0
Sample A Male 60.9
Sample B Male 64.7
Sample C Female 52.4
Sample D Female 46.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74056144 Antisense, RP_051019_03_E12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
74056144 Antisense, RP_051019_03_E12, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.