BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:72.0 nTPM
HPA:72.0 nTPM
GTEx:48.3 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:69.7 nTPM
Mouse:65.3 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037773
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 72.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 67.8
2481 Female, age 94, left hemisphere 72.3
2288 Male, age 75, left hemisphere 71.6
1781 Male, age 74, unknown 67.7
2846 Female, age 79, unknown 67.6
2289 Male, age 61, right hemisphere 66.3
1854 Male, age 80, left hemisphere 66.0
1857 Female, age 85, left hemisphere 65.9
2290 Female, age 72, unknown 65.1
Claustrum
nTPM: 65.7
1956 Male, age 74, unknown 68.9
2491 Male, age 75, both hemispheres 68.0
2392 Female, age 94, both hemispheres 67.2
2196 Female, age 79, unknown 66.4
2292 Female, age 85, both hemispheres 66.3
2198 Male, age 80, both hemispheres 66.0
2284 Female, age 91, both hemispheres 64.1
2568 Male, age 61, both hemispheres 63.6
2645 Female, age 72, unknown 60.6
Globus pallidus, externus
nTPM: 70.9
1996 Male, age 80, right hemisphere 73.0
2567 Female, age 72, unknown 72.5
2395 Male, age 75, both hemispheres 70.8
2772 Female, age 79, unknown 70.7
2646 Male, age 61, right hemisphere 67.4
Globus pallidus, internus
nTPM: 72.0
2287 Male, age 75, right hemisphere 77.6
2778 Female, age 91, both hemispheres 74.7
2037 Male, age 80, right hemisphere 72.1
2483 Female, age 94, right hemisphere 70.6
2566 Female, age 72, unknown 69.8
1818 Male, age 74, unknown 69.6
2111 Female, age 85, right hemisphere 69.5
Nucleus accumbens
nTPM: 68.3
2391 Female, age 94, left hemisphere 77.5
2286 Male, age 75, left hemisphere 70.5
2698 Female, age 72, unknown 70.3
2732 Male, age 80, right hemisphere 66.2
1806 Female, age 85, left hemisphere 66.0
1783 Male, age 74, unknown 65.8
2824 Male, age 61, right hemisphere 65.5
1856 Female, age 91, right hemisphere 64.5
Nucleus basalis of Meynert
nTPM: 66.9
2484 Female, age 94, left hemisphere 68.0
2569 Male, age 61, both hemispheres 67.5
2821 Male, age 75, both hemispheres 66.2
2393 Male, age 80, right hemisphere 65.7
Nucleus of the diagonal band
nTPM: 66.0
1812 Female, age 91, both hemispheres 69.4
2775 Male, age 80, right hemisphere 67.6
2195 Female, age 85, both hemispheres 65.1
2029 Male, age 61, right hemisphere 64.5
1979 Male, age 74, unknown 63.6
Olfactory tubercle
nTPM: 64.5
1846 Male, age 80, right hemisphere 67.4
2856 Male, age 75, right hemisphere 64.8
1998 Female, age 91, both hemispheres 64.7
2487 Female, age 94, left hemisphere 61.0
Putamen
nTPM: 66.4
2482 Female, age 94, left hemisphere 69.4
1829 Male, age 74, unknown 69.1
2647 Male, age 75, left hemisphere 68.8
1937 Female, age 91, right hemisphere 65.8
2466 Female, age 79, unknown 64.4
2489 Female, age 72, unknown 63.6
1838 Male, age 80, right hemisphere 63.4
Septal nuclei
nTPM: 64.5
2031 Female, age 72, unknown 68.2
2009 Female, age 91, both hemispheres 66.5
2629 Female, age 94, right hemisphere 65.6
2199 Male, age 80, right hemisphere 65.0
1960 Male, age 74, unknown 64.1
2394 Male, age 61, left hemisphere 61.1
2059 Female, age 85, both hemispheres 61.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.6
Samples: 246

Max nTPM: 85.0
Min nTPM: 34.3
Std nTPM: 7.2
Median nTPM: 44.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 85.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 78.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 71.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 66.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 63.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 62.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 61.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 60.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.8
Samples: 246

Max nTPM: 86.4
Min nTPM: 29.5
Std nTPM: 8.0
Median nTPM: 42.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 86.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 83.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 72.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 68.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 67.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 62.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 62.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 62.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 61.8
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Brain - Putamen (basal ganglia)
Average nTPM: 48.3
Samples: 205

Max nTPM: 75.5
Min nTPM: 32.2
Std nTPM: 7.5
Median nTPM: 47.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 75.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 72.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 71.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 69.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 68.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 67.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 66.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 63.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 63.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 63.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 63.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.0
FF:10164-103B2 76 years, female 82.0
Globus pallidus
Scaled Tags Per Million: 105.8
FF:10161-103A8 76 years, female 106.7
FF:10175-103C4 60 years, female 104.9
Nucleus accumbens
Scaled Tags Per Million: 68.2
FF:10037-101F1 23-56 years, mixed 68.2
Putamen
Scaled Tags Per Million: 95.5
FF:10176-103C5 60 years, female 95.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 69.7
Pig sample Sample description nTPM
Caudate
nTPM: 54.5
Samples: 4

Max nTPM: 59.2
Min nTPM: 49.7
Sample A Female 59.2
Sample B Female 49.7
Sample C Male 59.0
Sample D Male 50.2
Putamen
nTPM: 69.7
Samples: 4

Max nTPM: 86.8
Min nTPM: 58.1
Sample A Female 69.1
Sample B Female 58.1
Sample C Male 86.8
Sample D Male 64.9
Septum
nTPM: 56.9
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.7
Sample A Female 60.8
Sample B Female 51.7
Sample C Male 58.9
Sample D Male 56.1
Ventral pallidum
nTPM: 55.7
Samples: 4

Max nTPM: 59.3
Min nTPM: 51.1
Sample A Female 54.9
Sample B Female 59.3
Sample C Male 51.1
Sample D Male 57.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 65.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 57.1
Samples: 4

Max nTPM: 62.6
Min nTPM: 51.9
Sample A Male 56.4
Sample B Male 51.9
Sample C Female 62.6
Sample D Female 57.3
Septum
nTPM: 65.3
Samples: 4

Max nTPM: 68.6
Min nTPM: 61.1
Sample A Male 61.1
Sample B Male 63.3
Sample C Female 68.6
Sample D Female 68.2
Ventral forebrain
nTPM: 57.4
Samples: 4

Max nTPM: 59.0
Min nTPM: 56.0
Sample A Male 58.0
Sample B Male 56.0
Sample C Female 56.4
Sample D Female 59.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
532735 Antisense, RP_040825_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
532735 Antisense, RP_040825_01_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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