MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.0 nTPM
HPA:68.0 nTPM
GTEx:53.4 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:67.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
1870 Female, age 42, unknown 68.2
1827 Male, age 72, unknown 67.7
2019 Male, age 18, unknown 67.1
2411 Female, age 72, unknown 66.8
1830 Male, age 51, unknown 65.8
1833 Male, age 53, unknown 65.6
2828 Female, age 72, unknown 64.0
2666 Male, age 74, left hemisphere 63.6
2219 Male, age 76, both hemispheres 63.1
2586 Male, age 75, left hemisphere 62.1
Dorsal raphe nucleus
nTPM: 65.0
2016 Female, age 72, unknown 68.5
1828 Male, age 53, unknown 65.0
2750 Male, age 76, both hemispheres 64.9
2298 Female, age 72, unknown 64.8
2047 Male, age 72, unknown 61.6
Inferior colliculus
nTPM: 66.4
1848 Female, age 42, unknown 67.4
2849 Male, age 72, unknown 66.5
2097 Female, age 72, unknown 66.2
1890 Male, age 53, unknown 65.3
Median raphe nucleus
nTPM: 61.6
2220 Male, age 76, midline 61.6
Pedunculopontine tegmental nucleus
nTPM: 65.1
2334 Male, age 80, both hemispheres 66.4
1921 Female, age 85, both hemispheres 66.2
2338 Male, age 61, both hemispheres 62.8
Periaquaductal grey, anterior
nTPM: 64.9
1947 Male, age 18, unknown 66.4
2502 Female, age 75, unknown 65.6
1795 Male, age 51, unknown 62.7
Periaquaductal grey, dorsal
nTPM: 67.3
1840 Male, age 53, unknown 69.6
1831 Male, age 72, unknown 67.0
2850 Male, age 76, both hemispheres 67.0
2464 Female, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 65.6
2053 Male, age 18, unknown 66.7
2140 Male, age 76, both hemispheres 66.2
2272 Male, age 74, both hemispheres 63.9
Pretectal area
nTPM: 65.9
1815 Male, age 53, unknown 68.2
1817 Female, age 42, unknown 68.1
2007 Male, age 72, unknown 68.0
2825 Male, age 18, unknown 66.4
1944 Female, age 72, unknown 66.1
1816 Male, age 51, unknown 65.9
2316 Male, age 76, right hemisphere 65.3
2224 Female, age 72, unknown 65.2
2273 Male, age 74, both hemispheres 64.7
2407 Male, age 75, both hemispheres 64.3
2667 Female, age 75, unknown 62.9
Red nucleus
nTPM: 68.0
2503 Female, age 72, unknown 72.8
1821 Female, age 72, unknown 70.5
1865 Male, age 51, unknown 69.8
2725 Female, age 75, unknown 69.7
1954 Female, age 42, unknown 69.3
2588 Male, age 74, left hemisphere 68.1
2823 Male, age 76, right hemisphere 67.2
1904 Male, age 53, unknown 66.2
2769 Male, age 72, unknown 66.2
2227 Male, age 72, unknown 65.8
2785 Male, age 18, unknown 65.8
2584 Male, age 75, left hemisphere 65.2
Substantia nigra
nTPM: 64.4
1889 Female, age 72, unknown 67.5
2583 Male, age 75, right hemisphere 66.0
2590 Female, age 75, unknown 65.9
2241 Male, age 72, unknown 64.7
2409 Female, age 72, unknown 64.0
2699 Male, age 18, unknown 64.0
2665 Male, age 74, both hemispheres 63.9
1941 Male, age 53, unknown 63.6
1851 Male, age 51, unknown 63.4
1916 Female, age 42, unknown 60.6
Superior colliculus
nTPM: 66.5
1895 Male, age 76, right hemisphere 69.4
1995 Male, age 72, unknown 69.4
1913 Female, age 42, unknown 68.5
2587 Male, age 74, left hemisphere 68.2
1839 Male, age 51, unknown 67.4
2668 Female, age 75, unknown 65.5
1796 Male, age 53, unknown 65.0
2664 Male, age 75, both hemispheres 64.0
2261 Male, age 18, unknown 63.9
2087 Female, age 72, unknown 63.6
Ventral tegmental area
nTPM: 63.1
2410 Female, age 72, unknown 64.4
2223 Female, age 72, unknown 63.6
1915 Female, age 42, unknown 63.4
1942 Male, age 51, unknown 63.2
2021 Male, age 53, unknown 63.0
2218 Male, age 76, both hemispheres 60.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.4
Samples: 139

Max nTPM: 119.8
Min nTPM: 32.9
Std nTPM: 14.8
Median nTPM: 49.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 119.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 106.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 96.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 91.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 88.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 86.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 85.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.0
Pig sample Sample description nTPM
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 76.5
Min nTPM: 61.9
Sample A Female 76.5
Sample B Female 61.9
Sample C Male 63.1
Sample D Male 62.3
Periaqueductal gray
nTPM: 55.8
Samples: 3

Max nTPM: 57.8
Min nTPM: 52.4
Sample B Female 52.4
Sample C Male 57.8
Sample D Male 57.2
Substantia nigra
nTPM: 56.1
Samples: 4

Max nTPM: 65.8
Min nTPM: 49.7
Sample A Female 65.8
Sample B Female 49.7
Sample C Male 54.1
Sample D Male 54.6
Superior colliculi
nTPM: 63.3
Samples: 4

Max nTPM: 70.7
Min nTPM: 51.8
Sample A Female 70.7
Sample B Female 51.8
Sample C Male 65.1
Sample D Male 65.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 72.6
Min nTPM: 61.6
Sample A Male 61.6
Sample B Male 69.5
Sample C Female 72.6
Sample D Female 64.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
532735 Antisense, RP_040825_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.