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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:128.9 nTPM
GTEx:128.9 nTPM
FANTOM5:156.2 Scaled Tags Per Million
Pig:72.0 nTPM
Mouse:141.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 128.9
Samples: 105

Max nTPM: 202.1
Min nTPM: 74.9
Std nTPM: 22.8
Median nTPM:
322_1 76 years, male 202.1
375_1 74 years, female 189.5
6_1 73 years, female 177.5
307_1 66 years, female 175.1
237_1 82 years, male 173.8
2_1 77 years, female 169.8
117_1 61 years, male 167.2
495_1 57 years, female 162.7
218_1 71 years, female 162.0
229_1 69 years, female 160.6
447_1 81 years, male 160.1
347_1 72 years, male 159.7
43_1 64 years, female 159.0
139_1 64 years, female 154.8
81_1 67 years, male 153.5
145_1 84 years, male 151.8
313_1 79 years, female 151.4
379_1 60 years, male 150.6
311_1 78 years, male 150.2
324_1 76 years, male 150.0
153_1 70 years, female 149.6
162_1 79 years, female 148.4
316_1 62 years, male 147.8
405_1 91 years, male 146.7
173_1 67 years, male 146.0
348_1 84 years, male 145.1
480_1 63 years, male 142.6
17_1 71 years, male 142.0
415_1 77 years, female 141.5
319_1 81 years, male 141.3
266_1 85 years, male 140.8
404_1 82 years, female 140.4
217_1 76 years, male 139.3
246_1 77 years, male 138.7
293_1 68 years, female 135.4
137_1 83 years, male 133.8
115_1 83 years, male 133.7
386_1 76 years, male 133.2
18_1 88 years, male 133.0
335_1 73 years, female 132.0
384_1 83 years, male 131.8
501_1 88 years, male 131.7
389_1 86 years, female 129.7
42_1 85 years, male 129.4
189_1 76 years, male 128.3
376_1 75 years, female 127.5
32_1 67 years, male 127.4
142_1 61 years, female 127.1
9_1 66 years, female 126.1
99_1 64 years, male 126.1
425_1 59 years, female 125.9
499_1 55 years, female 125.6
350_1 84 years, female 125.5
109_1 81 years, female 125.3
466_1 57 years, female 124.7
468_1 89 years, male 124.6
243_1 75 years, male 124.4
120_1 70 years, female 123.8
490_1 67 years, female 123.8
286_1 68 years, female 123.2
172_1 72 years, female 123.0
526_1 61 years, male 122.3
4_1 88 years, female 121.5
265_1 87 years, male 121.2
518_1 75 years, female 120.9
35_1 74 years, female 119.9
177_1 74 years, male 119.8
251_1 78 years, male 119.4
321_1 62 years, female 119.3
317_1 60 years, male 119.1
352_1 62 years, male 118.7
406_1 79 years, male 117.5
314_1 67 years, male 116.5
414_1 84 years, female 116.4
355_1 70 years, female 115.7
452_1 88 years, female 115.1
377_1 82 years, female 114.3
349_1 83 years, male 113.6
353_1 82 years, female 113.4
119_1 70 years, female 113.1
292_1 71 years, male 112.8
288_1 66 years, female 112.7
354_1 81 years, female 111.1
506_1 65 years, male 110.3
291_1 76 years, male 110.1
89_1 63 years, male 110.0
295_1 61 years, female 109.4
254_1 77 years, female 108.6
413_1 59 years, female 107.8
264_1 73 years, female 107.6
315_1 62 years, female 107.4
163_1 78 years, male 106.5
517_1 88 years, male 106.1
308_1 70 years, female 105.4
351_1 91 years, male 102.9
396_1 62 years, male 102.3
320_1 89 years, female 102.1
503_1 68 years, male 101.2
394_1 75 years, female 98.2
126_1 63 years, male 95.0
318_1 68 years, male 92.0
491_1 89 years, female 91.4
356_1 87 years, female 90.4
41_1 94 years, female 76.4
149_1 88 years, male 74.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 156.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 156.2
FF:10030-101E3 24-65 years, mixed 156.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.0
Pig sample Sample description nTPM
Retina
nTPM: 72.0
Samples: 4

Max nTPM: 76.9
Min nTPM: 64.0
Sample A Female 70.8
Sample B Female 76.9
Sample C Male 76.3
Sample D Male 64.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.0
Mouse sample Sample description nTPM
Retina
nTPM: 141.0
Samples: 4

Max nTPM: 146.1
Min nTPM: 134.1
Sample A Male 146.1
Sample B Male 142.3
Sample C Female 134.1
Sample D Female 141.3

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