MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.4 nTPM
HPA:95.4 nTPM
GTEx:84.1 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:71.2 nTPM
Mouse:93.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.8
2666 Male, age 74, left hemisphere 104.1
1870 Female, age 42, unknown 97.4
2586 Male, age 75, left hemisphere 94.4
1833 Male, age 53, unknown 93.6
2411 Female, age 72, unknown 91.0
1827 Male, age 72, unknown 89.6
1830 Male, age 51, unknown 87.9
2219 Male, age 76, both hemispheres 87.5
2019 Male, age 18, unknown 87.0
2828 Female, age 72, unknown 85.5
Dorsal raphe nucleus
nTPM: 84.8
2016 Female, age 72, unknown 95.3
2298 Female, age 72, unknown 85.0
1828 Male, age 53, unknown 83.6
2047 Male, age 72, unknown 83.0
2750 Male, age 76, both hemispheres 77.3
Inferior colliculus
nTPM: 89.6
2849 Male, age 72, unknown 95.7
1848 Female, age 42, unknown 92.8
1890 Male, age 53, unknown 89.1
2097 Female, age 72, unknown 80.8
Median raphe nucleus
nTPM: 79.9
2220 Male, age 76, midline 79.9
Pedunculopontine tegmental nucleus
nTPM: 88.9
2338 Male, age 61, both hemispheres 97.4
2334 Male, age 80, both hemispheres 89.7
1921 Female, age 85, both hemispheres 79.8
Periaquaductal grey, anterior
nTPM: 86.4
2502 Female, age 75, unknown 91.2
1947 Male, age 18, unknown 88.5
1795 Male, age 51, unknown 79.4
Periaquaductal grey, dorsal
nTPM: 83.7
1840 Male, age 53, unknown 88.3
1831 Male, age 72, unknown 85.6
2464 Female, age 72, unknown 84.2
2850 Male, age 76, both hemispheres 76.8
Periaquaductal grey, lateral
nTPM: 80.9
2053 Male, age 18, unknown 89.5
2272 Male, age 74, both hemispheres 79.8
2140 Male, age 76, both hemispheres 73.3
Pretectal area
nTPM: 85.0
2407 Male, age 75, both hemispheres 95.5
1815 Male, age 53, unknown 94.4
2825 Male, age 18, unknown 91.3
1816 Male, age 51, unknown 88.3
1817 Female, age 42, unknown 87.3
2316 Male, age 76, right hemisphere 85.7
2007 Male, age 72, unknown 83.6
2224 Female, age 72, unknown 81.9
2667 Female, age 75, unknown 77.8
2273 Male, age 74, both hemispheres 76.8
1944 Female, age 72, unknown 72.5
Red nucleus
nTPM: 95.4
1821 Female, age 72, unknown 110.9
2503 Female, age 72, unknown 110.6
2588 Male, age 74, left hemisphere 102.1
2584 Male, age 75, left hemisphere 101.4
1865 Male, age 51, unknown 98.5
1904 Male, age 53, unknown 94.4
2725 Female, age 75, unknown 93.3
2769 Male, age 72, unknown 89.4
2227 Male, age 72, unknown 88.2
1954 Female, age 42, unknown 87.2
2785 Male, age 18, unknown 85.5
2823 Male, age 76, right hemisphere 83.6
Substantia nigra
nTPM: 89.7
2665 Male, age 74, both hemispheres 104.9
2590 Female, age 75, unknown 100.5
2241 Male, age 72, unknown 93.4
1851 Male, age 51, unknown 91.8
2583 Male, age 75, right hemisphere 88.8
2409 Female, age 72, unknown 88.5
2699 Male, age 18, unknown 88.1
1889 Female, age 72, unknown 86.3
1941 Male, age 53, unknown 80.2
1916 Female, age 42, unknown 74.5
Superior colliculus
nTPM: 89.8
2587 Male, age 74, left hemisphere 107.7
1913 Female, age 42, unknown 95.1
1839 Male, age 51, unknown 94.5
1995 Male, age 72, unknown 93.8
2664 Male, age 75, both hemispheres 91.5
1895 Male, age 76, right hemisphere 91.4
2261 Male, age 18, unknown 85.8
2668 Female, age 75, unknown 83.2
1796 Male, age 53, unknown 80.8
2087 Female, age 72, unknown 74.3
Ventral tegmental area
nTPM: 85.0
2223 Female, age 72, unknown 92.0
1915 Female, age 42, unknown 89.8
2021 Male, age 53, unknown 88.4
2410 Female, age 72, unknown 85.1
1942 Male, age 51, unknown 81.6
2218 Male, age 76, both hemispheres 73.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.1
Samples: 139

Max nTPM: 172.0
Min nTPM: 45.0
Std nTPM: 25.0
Median nTPM: 81.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 172.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 160.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 148.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 144.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 139.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 130.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 123.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 122.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 122.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 119.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.3
FF:10158-103A5 76 years, female 17.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.2
Pig sample Sample description nTPM
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 83.1
Min nTPM: 57.1
Sample A Female 83.1
Sample B Female 57.1
Sample C Male 69.0
Sample D Male 60.1
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 57.1
Min nTPM: 48.4
Sample B Female 53.1
Sample C Male 57.1
Sample D Male 48.4
Substantia nigra
nTPM: 61.8
Samples: 4

Max nTPM: 68.7
Min nTPM: 58.1
Sample A Female 68.7
Sample B Female 59.2
Sample C Male 61.0
Sample D Male 58.1
Superior colliculi
nTPM: 71.2
Samples: 4

Max nTPM: 74.6
Min nTPM: 68.5
Sample A Female 74.6
Sample B Female 72.1
Sample C Male 69.5
Sample D Male 68.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.3
Samples: 4

Max nTPM: 96.9
Min nTPM: 89.8
Sample A Male 91.7
Sample B Male 94.9
Sample C Female 96.9
Sample D Female 89.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70919489 Antisense, RP_050713_01_D11, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.