MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:953.9 nTPM
HPA:953.9 nTPM
GTEx:764.4 nTPM
FANTOM5:175.9 Scaled Tags Per Million
Pig:402.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 953.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 943.0
2586 Male, age 75, left hemisphere 1016.5
2828 Female, age 72, unknown 955.1
2411 Female, age 72, unknown 951.8
2666 Male, age 74, left hemisphere 948.0
1870 Female, age 42, unknown 936.2
1830 Male, age 51, unknown 934.6
1833 Male, age 53, unknown 929.5
1827 Male, age 72, unknown 921.8
2219 Male, age 76, both hemispheres 920.2
2019 Male, age 18, unknown 915.8
Dorsal raphe nucleus
nTPM: 928.3
2750 Male, age 76, both hemispheres 936.7
2016 Female, age 72, unknown 936.5
2298 Female, age 72, unknown 927.7
2047 Male, age 72, unknown 924.6
1828 Male, age 53, unknown 915.9
Inferior colliculus
nTPM: 921.7
1890 Male, age 53, unknown 930.5
2849 Male, age 72, unknown 929.6
1848 Female, age 42, unknown 919.4
2097 Female, age 72, unknown 907.4
Median raphe nucleus
nTPM: 930.0
2220 Male, age 76, midline 930.0
Pedunculopontine tegmental nucleus
nTPM: 928.7
2338 Male, age 61, both hemispheres 950.0
2334 Male, age 80, both hemispheres 941.5
1921 Female, age 85, both hemispheres 894.7
Periaquaductal grey, anterior
nTPM: 952.9
2502 Female, age 75, unknown 991.1
1795 Male, age 51, unknown 937.8
1947 Male, age 18, unknown 929.8
Periaquaductal grey, dorsal
nTPM: 923.3
1840 Male, age 53, unknown 937.6
2464 Female, age 72, unknown 931.8
1831 Male, age 72, unknown 919.4
2850 Male, age 76, both hemispheres 904.5
Periaquaductal grey, lateral
nTPM: 923.2
2053 Male, age 18, unknown 939.9
2272 Male, age 74, both hemispheres 917.0
2140 Male, age 76, both hemispheres 912.8
Pretectal area
nTPM: 915.4
2316 Male, age 76, right hemisphere 935.3
2825 Male, age 18, unknown 930.0
2407 Male, age 75, both hemispheres 923.6
2007 Male, age 72, unknown 922.7
1817 Female, age 42, unknown 917.0
2224 Female, age 72, unknown 916.3
1815 Male, age 53, unknown 914.5
1816 Male, age 51, unknown 910.5
1944 Female, age 72, unknown 902.4
2667 Female, age 75, unknown 899.0
2273 Male, age 74, both hemispheres 898.8
Red nucleus
nTPM: 953.9
2503 Female, age 72, unknown 1007.4
2227 Male, age 72, unknown 974.0
2584 Male, age 75, left hemisphere 969.2
1904 Male, age 53, unknown 968.3
2769 Male, age 72, unknown 967.3
1865 Male, age 51, unknown 963.5
2588 Male, age 74, left hemisphere 944.2
1821 Female, age 72, unknown 943.8
1954 Female, age 42, unknown 935.0
2725 Female, age 75, unknown 932.9
2785 Male, age 18, unknown 929.6
2823 Male, age 76, right hemisphere 911.9
Substantia nigra
nTPM: 945.2
2699 Male, age 18, unknown 999.2
1851 Male, age 51, unknown 987.0
2665 Male, age 74, both hemispheres 982.6
2590 Female, age 75, unknown 956.9
1916 Female, age 42, unknown 949.7
2583 Male, age 75, right hemisphere 945.8
2409 Female, age 72, unknown 924.1
1941 Male, age 53, unknown 905.2
1889 Female, age 72, unknown 904.8
2241 Male, age 72, unknown 896.4
Superior colliculus
nTPM: 940.7
2664 Male, age 75, both hemispheres 971.1
1995 Male, age 72, unknown 970.2
1796 Male, age 53, unknown 961.7
2587 Male, age 74, left hemisphere 960.2
1913 Female, age 42, unknown 957.0
2668 Female, age 75, unknown 929.2
1839 Male, age 51, unknown 927.6
2261 Male, age 18, unknown 927.0
2087 Female, age 72, unknown 912.0
1895 Male, age 76, right hemisphere 890.5
Ventral tegmental area
nTPM: 947.0
1915 Female, age 42, unknown 970.6
2410 Female, age 72, unknown 953.1
2223 Female, age 72, unknown 952.5
2021 Male, age 53, unknown 952.2
1942 Male, age 51, unknown 933.5
2218 Male, age 76, both hemispheres 920.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 764.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 764.4
Samples: 139

Max nTPM: 2344.3
Min nTPM: 257.2
Std nTPM: 307.3
Median nTPM: 701.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2344.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1931.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1672.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1625.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1578.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1385.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1286.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1265.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1240.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1196.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1158.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.9
FF:10158-103A5 76 years, female 175.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 402.2
Pig sample Sample description nTPM
Midbrain
nTPM: 379.7
Samples: 4

Max nTPM: 561.6
Min nTPM: 266.6
Sample A Female 561.6
Sample B Female 373.1
Sample C Male 317.6
Sample D Male 266.6
Periaqueductal gray
nTPM: 307.4
Samples: 3

Max nTPM: 341.9
Min nTPM: 275.1
Sample B Female 305.3
Sample C Male 341.9
Sample D Male 275.1
Substantia nigra
nTPM: 379.4
Samples: 4

Max nTPM: 476.8
Min nTPM: 328.3
Sample A Female 476.8
Sample B Female 361.0
Sample C Male 351.3
Sample D Male 328.3
Superior colliculi
nTPM: 402.2
Samples: 4

Max nTPM: 481.1
Min nTPM: 347.6
Sample A Female 481.1
Sample B Female 410.7
Sample C Male 369.3
Sample D Male 347.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.