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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:125.0 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:56.7 nTPM
Mouse:300.2 nTPM
Allen mouse:6.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Amygdala
nTPM: 38.7
2517 Female, age 94, left hemisphere 49.3
2814 Male, age 76, right hemisphere 39.3
2514 Male, age 75, right hemisphere 36.3
1987 Female, age 91, left hemisphere 34.6
2695 Female, age 67, right hemisphere 33.9
Basal amygdala
nTPM: 63.1
2685 Female, age 94, left hemisphere 79.1
2827 Female, age 67, right hemisphere 76.9
2243 Female, age 91, right hemisphere 65.4
2609 Male, age 75, right hemisphere 58.2
2110 Male, age 80, left hemisphere 53.7
1955 Male, age 76, both hemispheres 45.2
Central amygdala
nTPM: 53.2
2826 Female, age 94, left hemisphere 92.2
2239 Male, age 80, left hemisphere 57.5
2515 Male, age 75, right hemisphere 43.7
2701 Female, age 91, right hemisphere 36.4
1905 Male, age 76, both hemispheres 36.0
Corticomedial amygdala
nTPM: 53.5
2535 Female, age 67, right hemisphere 71.0
2829 Male, age 80, left hemisphere 67.5
2242 Female, age 91, right hemisphere 56.8
2429 Female, age 94, left hemisphere 46.8
2428 Male, age 75, right hemisphere 42.5
2240 Male, age 76, both hemispheres 36.6
Lateral amygdala
nTPM: 53.6
2534 Female, age 94, left hemisphere 78.9
2256 Male, age 80, left hemisphere 65.9
2255 Female, age 91, right hemisphere 49.8
2830 Female, age 67, right hemisphere 45.9
1883 Male, age 76, both hemispheres 41.6
2516 Male, age 75, right hemisphere 39.2
Stria terminalis, bed nucleus
nTPM: 46.4
1974 Female, age 91, both hemispheres 56.4
2486 Female, age 94, both hemispheres 47.7
2201 Male, age 74, unknown 35.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125.0
Samples: 152

Max nTPM: 370.4
Min nTPM: 40.3
Std nTPM: 47.8
Median nTPM: 118.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 370.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 279.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 246.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 223.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 219.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 211.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 207.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 206.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 204.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 203.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 200.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 198.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 193.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 190.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 186.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 183.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 181.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 179.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 178.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 177.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 172.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 168.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 167.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 158.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 158.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 157.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 154.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 154.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 154.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 151.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 146.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 145.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 144.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 143.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 143.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 137.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 136.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 135.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 134.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 134.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 134.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 133.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 133.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 132.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 131.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 129.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 128.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 125.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 125.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 124.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 118.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 118.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 118.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 116.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 115.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 113.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 112.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 112.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 112.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 111.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 111.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 109.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 108.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 107.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 107.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 106.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 106.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 104.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 104.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 104.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 103.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 100.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 97.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 97.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 96.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 96.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 95.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 94.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 94.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 93.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 92.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 90.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 89.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 89.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 79.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 79.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 75.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 74.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 74.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 73.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 73.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 72.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 71.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 60.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 57.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 54.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 50.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 44.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 44.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 40.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.7
FF:10151-102I7 76 years, female 102.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.7
Pig sample Sample description nTPM
Amygdala
nTPM: 56.7
Samples: 4

Max nTPM: 76.4
Min nTPM: 43.5
Sample A Female 76.4
Sample B Female 43.5
Sample C Male 54.8
Sample D Male 52.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 300.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 300.2
Samples: 4

Max nTPM: 350.8
Min nTPM: 275.3
Sample A Male 282.4
Sample B Male 292.4
Sample C Female 350.8
Sample D Female 275.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.3
76003523 Antisense, RP_060608_02_F04, Mouse strain C57BL/6J (56 days, male) 6.3

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