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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:79.5 nTPM
GTEx:93.0 nTPM
FANTOM5:78.4 Scaled Tags Per Million
Pig:34.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 79.5
Sample id Sample description nTPM
Putamen
nTPM: 79.5
1937 Female, age 91, right hemisphere 83.4
2466 Female, age 79, unknown 83.4
2647 Male, age 75, left hemisphere 83.3
1829 Male, age 74, unknown 77.8
2482 Female, age 94, left hemisphere 77.6
1838 Male, age 80, right hemisphere 76.2
2489 Female, age 72, unknown 74.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 93.0
Samples: 205

Max nTPM: 153.9
Min nTPM: 42.5
Std nTPM: 18.6
Median nTPM: 91.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 153.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 146.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 142.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 135.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 135.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 130.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 130.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 129.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 129.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 128.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 127.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 124.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 121.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 121.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 120.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 120.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 119.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 119.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 117.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 116.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 116.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 116.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 116.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 116.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 115.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 114.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 114.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 114.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 113.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 112.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 112.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 112.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 112.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 111.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 110.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 110.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 110.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 109.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 109.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 109.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 109.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 108.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 108.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 108.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 108.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 107.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 105.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 105.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 105.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 104.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 104.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 104.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 103.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 103.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 103.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 103.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 103.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 103.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 103.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 102.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 102.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 101.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 101.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 100.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 100.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 100.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 100.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 100.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 99.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 99.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 98.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 98.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 98.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 97.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 97.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 96.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 96.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 96.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 95.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 95.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 95.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 95.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 95.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 95.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 94.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 94.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 94.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 94.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 94.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 94.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 93.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 93.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 93.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 93.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 93.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 93.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 93.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 92.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 92.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 92.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 92.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 92.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 91.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 91.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 91.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 91.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 91.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 91.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 91.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 91.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 90.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 90.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 90.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 90.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 89.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 89.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 89.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 89.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 89.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 89.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 88.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 88.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 87.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 87.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 86.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 86.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 86.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 86.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 86.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 86.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 85.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 85.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 85.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 85.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 84.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 84.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 83.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 83.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 83.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 83.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 82.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 82.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 82.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 82.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 82.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 82.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 82.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 81.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 81.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 81.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 81.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 81.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 80.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 80.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 80.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 80.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 80.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 80.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 79.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 79.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 79.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 79.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 78.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 78.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 78.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 78.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 76.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 76.4
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 76.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 76.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 75.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 75.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 75.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 74.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 74.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 73.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 73.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 72.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 72.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 72.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 72.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 72.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 71.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 71.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 71.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 69.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 69.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 69.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 69.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 69.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 67.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 67.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 67.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 65.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 65.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 64.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 63.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 62.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 58.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 58.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 57.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 54.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 53.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 49.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 42.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 78.4
FF:10176-103C5 60 years, female 78.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.3
Pig sample Sample description nTPM
Putamen
nTPM: 34.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 28.9
Sample A Female 31.9
Sample B Female 28.9
Sample C Male 41.3
Sample D Male 35.1

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