MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA:28.1 nTPM
GTEx:33.6 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:12.0 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.9
2019 Male, age 18, unknown 28.1
2586 Male, age 75, left hemisphere 27.9
1870 Female, age 42, unknown 27.3
2411 Female, age 72, unknown 27.2
2666 Male, age 74, left hemisphere 27.2
1827 Male, age 72, unknown 27.1
2828 Female, age 72, unknown 27.0
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 26.1
2219 Male, age 76, both hemispheres 25.0
Dorsal raphe nucleus
nTPM: 27.3
2016 Female, age 72, unknown 28.9
2047 Male, age 72, unknown 27.6
1828 Male, age 53, unknown 27.1
2750 Male, age 76, both hemispheres 26.7
2298 Female, age 72, unknown 26.4
Inferior colliculus
nTPM: 26.2
1848 Female, age 42, unknown 27.7
1890 Male, age 53, unknown 27.0
2097 Female, age 72, unknown 25.8
2849 Male, age 72, unknown 24.4
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Pedunculopontine tegmental nucleus
nTPM: 26.4
2338 Male, age 61, both hemispheres 26.7
1921 Female, age 85, both hemispheres 26.3
2334 Male, age 80, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 27.5
1947 Male, age 18, unknown 28.5
2502 Female, age 75, unknown 27.3
1795 Male, age 51, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 27.0
2850 Male, age 76, both hemispheres 27.6
1831 Male, age 72, unknown 27.1
1840 Male, age 53, unknown 27.1
2464 Female, age 72, unknown 26.2
Periaquaductal grey, lateral
nTPM: 27.7
2140 Male, age 76, both hemispheres 28.4
2053 Male, age 18, unknown 27.4
2272 Male, age 74, both hemispheres 27.3
Pretectal area
nTPM: 27.1
2273 Male, age 74, both hemispheres 29.6
1817 Female, age 42, unknown 28.5
1944 Female, age 72, unknown 27.9
2667 Female, age 75, unknown 27.3
2007 Male, age 72, unknown 27.2
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 26.6
1816 Male, age 51, unknown 26.4
1815 Male, age 53, unknown 26.3
2407 Male, age 75, both hemispheres 25.9
2825 Male, age 18, unknown 25.1
Red nucleus
nTPM: 28.1
1821 Female, age 72, unknown 30.0
1865 Male, age 51, unknown 29.7
1904 Male, age 53, unknown 29.3
1954 Female, age 42, unknown 29.0
2227 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 28.8
2823 Male, age 76, right hemisphere 27.5
2785 Male, age 18, unknown 27.3
2588 Male, age 74, left hemisphere 27.0
2725 Female, age 75, unknown 26.8
2769 Male, age 72, unknown 26.8
2584 Male, age 75, left hemisphere 25.5
Substantia nigra
nTPM: 26.5
2699 Male, age 18, unknown 29.1
1916 Female, age 42, unknown 28.5
1851 Male, age 51, unknown 28.0
1889 Female, age 72, unknown 27.5
1941 Male, age 53, unknown 26.8
2590 Female, age 75, unknown 26.4
2583 Male, age 75, right hemisphere 26.3
2241 Male, age 72, unknown 25.3
2665 Male, age 74, both hemispheres 25.2
2409 Female, age 72, unknown 21.8
Superior colliculus
nTPM: 26.7
1913 Female, age 42, unknown 29.6
1995 Male, age 72, unknown 29.5
2668 Female, age 75, unknown 27.4
2087 Female, age 72, unknown 26.5
2587 Male, age 74, left hemisphere 26.5
1796 Male, age 53, unknown 26.2
1839 Male, age 51, unknown 26.1
1895 Male, age 76, right hemisphere 26.0
2261 Male, age 18, unknown 25.0
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 27.3
2410 Female, age 72, unknown 29.6
1915 Female, age 42, unknown 27.9
2218 Male, age 76, both hemispheres 27.0
1942 Male, age 51, unknown 26.8
2223 Female, age 72, unknown 26.5
2021 Male, age 53, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.6
Samples: 139

Max nTPM: 71.1
Min nTPM: 14.6
Std nTPM: 9.5
Median nTPM: 31.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 56.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 51.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 50.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 49.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.9
FF:10158-103A5 76 years, female 16.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 15.0
Min nTPM: 8.7
Sample A Female 15.0
Sample B Female 10.1
Sample C Male 8.7
Sample D Male 11.8
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 12.9
Min nTPM: 10.3
Sample B Female 10.3
Sample C Male 12.9
Sample D Male 10.3
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.5
Sample A Female 13.5
Sample B Female 10.5
Sample C Male 11.2
Sample D Male 13.5
Superior colliculi
nTPM: 13.0
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.2
Sample A Female 16.1
Sample B Female 12.8
Sample C Male 11.8
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 12.4
Min nTPM: 11.0
Sample A Male 12.4
Sample B Male 12.3
Sample C Female 11.0
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
67881545 Antisense, RP_041018_01_E02, Mouse strain C57BL/6J (56 days, male) 2.9
71664147 Antisense, RP_050927_04_G08, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.