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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:109.2 nTPM
HPA:98.7 nTPM
GTEx:109.2 nTPM
FANTOM5:199.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA031068Antibody HPA072487Antibody CAB024930
Glandular cells MediumHighHigh







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 98.7
overview
Male, age 65
Small intestine sample 232
nTPM: 91.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 133.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 74.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 95.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 109.2
Samples: 187

Max nTPM: 410.2
Min nTPM: 27.7
Std nTPM: 64.3
Median nTPM: 87.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 410.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 400.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 322.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 308.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 281.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 246.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 243.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 241.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 233.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 222.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 216.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 211.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 207.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 205.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 204.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 202.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 199.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 198.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 198.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 196.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 193.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 192.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 192.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 191.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 185.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 182.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 177.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 173.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 171.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 170.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 167.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 167.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 166.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 165.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 157.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 153.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 150.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 149.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 149.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 148.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 148.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 143.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 142.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 141.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 140.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 140.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 139.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 136.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 136.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 135.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 135.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 134.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 134.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 127.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 126.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 123.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 122.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 122.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 122.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 122.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 119.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 117.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 116.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 114.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 113.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 113.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 113.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 113.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 112.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 111.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 110.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 110.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 110.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 107.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 107.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 105.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 104.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 104.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 104.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 102.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 102.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 98.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 98.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 95.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 95.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 95.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 95.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 94.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 93.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 92.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 92.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 91.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 87.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 87.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 86.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 85.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 85.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 85.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 84.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 83.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 83.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 82.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 81.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 77.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 77.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 76.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 75.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 75.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 75.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 75.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 75.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 73.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 73.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 73.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 72.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 72.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 72.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 72.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 71.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 70.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 70.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 69.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 69.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 69.7
GTEX-1192X-2526-SM-59868 50-59 years, male 69.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 68.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 68.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 68.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 67.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 67.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 66.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 66.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 65.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 65.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 65.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 65.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 65.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 64.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 64.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 64.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 64.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 63.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 63.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 62.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 62.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 61.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 61.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 61.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 61.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 61.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 60.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 60.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 59.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 58.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 58.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 58.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 57.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 57.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 57.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 56.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 55.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 55.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 54.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 54.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 52.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 52.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 52.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 51.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 51.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 49.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 49.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 48.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 48.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 46.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 45.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 45.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 44.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 44.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 43.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 40.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 38.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 38.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 36.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 33.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 31.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 27.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 199.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 199.2
FF:10024-101D6 15,40,85 years, mixed 199.2

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