We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SUGP2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SUGP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:37.0 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:37.9 nTPM
Allen mouse:10.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Amygdala
nTPM: 21.6
2517 Female, age 94, left hemisphere 24.9
2814 Male, age 76, right hemisphere 24.8
1987 Female, age 91, left hemisphere 21.9
2514 Male, age 75, right hemisphere 20.0
2695 Female, age 67, right hemisphere 16.6
Basal amygdala
nTPM: 29.0
2685 Female, age 94, left hemisphere 34.7
2243 Female, age 91, right hemisphere 31.3
2110 Male, age 80, left hemisphere 30.3
1955 Male, age 76, both hemispheres 26.9
2827 Female, age 67, right hemisphere 25.7
2609 Male, age 75, right hemisphere 25.3
Central amygdala
nTPM: 24.4
2239 Male, age 80, left hemisphere 26.9
2701 Female, age 91, right hemisphere 25.5
1905 Male, age 76, both hemispheres 25.0
2826 Female, age 94, left hemisphere 23.8
2515 Male, age 75, right hemisphere 20.9
Corticomedial amygdala
nTPM: 28.9
2535 Female, age 67, right hemisphere 32.2
2429 Female, age 94, left hemisphere 31.6
2829 Male, age 80, left hemisphere 30.4
2242 Female, age 91, right hemisphere 28.0
2240 Male, age 76, both hemispheres 26.8
2428 Male, age 75, right hemisphere 24.6
Lateral amygdala
nTPM: 26.0
2256 Male, age 80, left hemisphere 31.3
2534 Female, age 94, left hemisphere 29.9
2255 Female, age 91, right hemisphere 28.1
1883 Male, age 76, both hemispheres 25.7
2516 Male, age 75, right hemisphere 22.1
2830 Female, age 67, right hemisphere 18.7
Stria terminalis, bed nucleus
nTPM: 27.6
2486 Female, age 94, both hemispheres 31.4
1974 Female, age 91, both hemispheres 27.1
2201 Male, age 74, unknown 24.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.0
Samples: 152

Max nTPM: 71.9
Min nTPM: 16.6
Std nTPM: 8.4
Median nTPM: 36.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 71.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 64.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 53.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 52.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 50.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 49.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 49.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 48.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 47.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 47.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 46.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 46.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 46.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 45.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 45.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 44.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 44.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 44.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 44.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 44.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 43.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 43.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 42.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 42.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 42.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 42.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 41.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 41.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 41.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 41.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 40.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 40.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 40.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 39.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 39.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 39.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 39.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 39.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 39.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 38.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 38.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 38.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 38.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 38.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 38.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 37.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 37.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 37.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 37.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 37.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 37.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 36.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 36.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 36.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 36.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 36.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 36.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 35.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 35.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 35.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 35.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 35.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 35.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 34.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 34.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 34.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 34.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 33.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 33.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 33.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 33.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 33.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 33.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 32.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 32.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 32.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 32.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 32.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 32.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 31.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 31.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 31.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 31.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 30.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 30.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 30.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 30.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 30.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 29.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 29.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 29.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 29.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 29.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 29.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 28.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 28.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 28.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 27.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 26.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 25.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 25.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 24.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 24.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 24.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 24.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 24.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 21.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 20.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 16.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 90.1
FF:10151-102I7 76 years, female 90.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.1
Pig sample Sample description nTPM
Amygdala
nTPM: 23.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.4
Sample A Female 25.8
Sample B Female 21.4
Sample C Male 21.5
Sample D Male 23.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 36.7
Sample A Male 38.8
Sample B Male 39.4
Sample C Female 36.8
Sample D Female 36.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.8
69549629 Antisense, RP_050301_01_E02, Mouse strain C57BL/6J (56 days, male) 10.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.