MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.5 nTPM
HPA:95.5 nTPM
GTEx:131.1 nTPM
FANTOM5:63.0 Scaled Tags Per Million
Pig:54.7 nTPM
Mouse:40.1 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.4
2666 Male, age 74, left hemisphere 97.8
2019 Male, age 18, unknown 93.2
2828 Female, age 72, unknown 88.8
1833 Male, age 53, unknown 88.2
2586 Male, age 75, left hemisphere 87.1
2219 Male, age 76, both hemispheres 84.7
1830 Male, age 51, unknown 83.9
2411 Female, age 72, unknown 83.8
1870 Female, age 42, unknown 83.3
1827 Male, age 72, unknown 83.0
Dorsal raphe nucleus
nTPM: 81.5
2047 Male, age 72, unknown 85.5
1828 Male, age 53, unknown 84.0
2016 Female, age 72, unknown 81.1
2750 Male, age 76, both hemispheres 80.8
2298 Female, age 72, unknown 75.9
Inferior colliculus
nTPM: 85.7
2849 Male, age 72, unknown 88.9
1848 Female, age 42, unknown 86.6
2097 Female, age 72, unknown 83.6
1890 Male, age 53, unknown 83.5
Median raphe nucleus
nTPM: 74.7
2220 Male, age 76, midline 74.7
Pedunculopontine tegmental nucleus
nTPM: 79.4
2334 Male, age 80, both hemispheres 86.8
1921 Female, age 85, both hemispheres 78.8
2338 Male, age 61, both hemispheres 72.6
Periaquaductal grey, anterior
nTPM: 84.1
2502 Female, age 75, unknown 86.5
1947 Male, age 18, unknown 84.9
1795 Male, age 51, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 78.2
2464 Female, age 72, unknown 81.7
1831 Male, age 72, unknown 81.3
2850 Male, age 76, both hemispheres 75.4
1840 Male, age 53, unknown 74.5
Periaquaductal grey, lateral
nTPM: 75.4
2140 Male, age 76, both hemispheres 76.6
2053 Male, age 18, unknown 76.4
2272 Male, age 74, both hemispheres 73.4
Pretectal area
nTPM: 78.6
1817 Female, age 42, unknown 93.3
2007 Male, age 72, unknown 90.5
1944 Female, age 72, unknown 82.9
1815 Male, age 53, unknown 81.7
1816 Male, age 51, unknown 81.2
2316 Male, age 76, right hemisphere 79.7
2825 Male, age 18, unknown 77.0
2667 Female, age 75, unknown 73.0
2224 Female, age 72, unknown 71.7
2407 Male, age 75, both hemispheres 68.7
2273 Male, age 74, both hemispheres 65.4
Red nucleus
nTPM: 95.5
2588 Male, age 74, left hemisphere 117.7
1954 Female, age 42, unknown 99.1
2725 Female, age 75, unknown 97.6
2769 Male, age 72, unknown 97.6
1904 Male, age 53, unknown 95.9
2503 Female, age 72, unknown 94.8
1821 Female, age 72, unknown 94.0
2227 Male, age 72, unknown 92.5
2785 Male, age 18, unknown 92.3
1865 Male, age 51, unknown 90.6
2823 Male, age 76, right hemisphere 89.8
2584 Male, age 75, left hemisphere 84.3
Substantia nigra
nTPM: 80.4
2665 Male, age 74, both hemispheres 103.6
1889 Female, age 72, unknown 85.4
1941 Male, age 53, unknown 83.0
1916 Female, age 42, unknown 80.3
1851 Male, age 51, unknown 80.2
2699 Male, age 18, unknown 77.5
2590 Female, age 75, unknown 76.4
2583 Male, age 75, right hemisphere 76.1
2409 Female, age 72, unknown 72.1
2241 Male, age 72, unknown 69.3
Superior colliculus
nTPM: 81.0
2587 Male, age 74, left hemisphere 87.7
1895 Male, age 76, right hemisphere 87.5
2668 Female, age 75, unknown 85.7
1839 Male, age 51, unknown 84.6
2087 Female, age 72, unknown 82.4
2261 Male, age 18, unknown 78.9
1796 Male, age 53, unknown 78.7
1995 Male, age 72, unknown 75.3
2664 Male, age 75, both hemispheres 75.0
1913 Female, age 42, unknown 73.8
Ventral tegmental area
nTPM: 78.9
2410 Female, age 72, unknown 82.1
1915 Female, age 42, unknown 81.9
1942 Male, age 51, unknown 79.8
2218 Male, age 76, both hemispheres 78.7
2223 Female, age 72, unknown 75.8
2021 Male, age 53, unknown 75.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.1
Samples: 139

Max nTPM: 426.2
Min nTPM: 41.8
Std nTPM: 65.7
Median nTPM: 113.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 426.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 406.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 339.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 313.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 300.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 281.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 281.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 244.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 231.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 226.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 224.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.0
FF:10158-103A5 76 years, female 63.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.7
Pig sample Sample description nTPM
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 48.8
Min nTPM: 31.2
Sample A Female 37.1
Sample B Female 31.2
Sample C Male 48.8
Sample D Male 46.2
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.8
Min nTPM: 24.0
Sample B Female 28.3
Sample C Male 28.8
Sample D Male 24.0
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 47.3
Min nTPM: 34.4
Sample A Female 47.3
Sample B Female 41.6
Sample C Male 36.1
Sample D Male 34.4
Superior colliculi
nTPM: 54.7
Samples: 4

Max nTPM: 59.7
Min nTPM: 52.9
Sample A Female 59.7
Sample B Female 53.0
Sample C Male 52.9
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 43.6
Min nTPM: 37.3
Sample A Male 37.9
Sample B Male 37.3
Sample C Female 41.6
Sample D Female 43.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
74657980 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 7.2
73573187 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.