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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:781.8 nTPM
HPA:781.8 nTPM
GTEx:240.1 nTPM
FANTOM5:2481.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA040098Antibody CAB033576
Endocrine cells Not detected-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Not detected-
Paneth cells Not detected-



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 781.8
overview
Male, age 65
Small intestine sample 232
nTPM: 829.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 926
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 713.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 658.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 240.1
Samples: 187

Max nTPM: 882.1
Min nTPM: 27.5
Std nTPM: 202.9
Median nTPM: 150.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 882.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 758.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 740.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 722.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 717.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 702.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 690.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 689.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 659.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 651.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 643.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 624.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 618.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 600.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 598.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 594.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 589.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 561.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 557.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 551.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 541.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 538.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 536.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 534.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 533.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 524.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 510.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 507.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 495.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 486.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 482.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 479.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 477.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 470.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 464.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 463.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 448.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 448.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 442.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 424.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 421.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 416.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 411.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 407.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 400.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 394.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 378.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 364.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 355.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 337.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 336.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 326.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 324.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 321.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 316.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 312.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 308.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 298.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 283.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 279.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 279.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 279.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 272.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 271.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 259.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 255.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 254.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 250.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 249.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 244.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 241.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 235.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 234.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 232.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 229.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 227.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 221.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 221.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 214.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 212.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 205.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 204.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 203.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 197.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 196.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 195.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 195.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 180.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 175.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 171.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 171.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 170.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 152.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 150.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 149.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 145.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 142.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 137.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 136.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 135.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 133.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 132.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 131.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 130.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 124.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 122.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 119.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 119.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 118.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 116.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 108.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 104.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 104.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 104.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 104.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 101.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 100.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 100.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 100.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 99.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 96.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 95.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 95.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 95.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 95.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 95.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 94.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 93.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 92.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 89.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 89.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 85.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 85.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 84.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 83.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 83.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 83.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 82.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 81.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 80.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 79.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 77.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 77.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 76.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 74.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 73.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 72.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 72.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 67.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 67.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 65.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 64.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 64.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 63.5
GTEX-1192X-2526-SM-59868 50-59 years, male 63.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 61.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 59.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 58.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 56.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 56.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 55.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 52.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 50.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 49.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 49.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 49.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 48.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 47.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 46.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 41.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 40.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 40.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 40.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 39.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 39.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 39.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 38.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 37.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 37.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 37.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 36.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 32.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 32.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 27.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2481.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2481.8
FF:10024-101D6 15,40,85 years, mixed 2481.8

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