MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:163.0 nTPM
HPA:163.0 nTPM
GTEx:205.1 nTPM
FANTOM5:202.8 Scaled Tags Per Million
Pig:126.7 nTPM
Mouse:39.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 163.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.6
1870 Female, age 42, unknown 159.5
1827 Male, age 72, unknown 158.4
2019 Male, age 18, unknown 156.2
1830 Male, age 51, unknown 155.8
1833 Male, age 53, unknown 155.6
2219 Male, age 76, both hemispheres 155.1
2411 Female, age 72, unknown 155.1
2828 Female, age 72, unknown 154.2
2586 Male, age 75, left hemisphere 148.5
2666 Male, age 74, left hemisphere 147.4
Dorsal raphe nucleus
nTPM: 159.1
2298 Female, age 72, unknown 165.0
2047 Male, age 72, unknown 160.1
2750 Male, age 76, both hemispheres 159.6
1828 Male, age 53, unknown 158.5
2016 Female, age 72, unknown 152.4
Inferior colliculus
nTPM: 162.4
2097 Female, age 72, unknown 165.6
1890 Male, age 53, unknown 161.9
2849 Male, age 72, unknown 161.2
1848 Female, age 42, unknown 161.0
Median raphe nucleus
nTPM: 159.5
2220 Male, age 76, midline 159.5
Pedunculopontine tegmental nucleus
nTPM: 163.0
2334 Male, age 80, both hemispheres 166.2
2338 Male, age 61, both hemispheres 161.6
1921 Female, age 85, both hemispheres 161.2
Periaquaductal grey, anterior
nTPM: 158.1
1947 Male, age 18, unknown 161.1
2502 Female, age 75, unknown 157.4
1795 Male, age 51, unknown 155.8
Periaquaductal grey, dorsal
nTPM: 154.9
2850 Male, age 76, both hemispheres 159.0
1840 Male, age 53, unknown 155.9
1831 Male, age 72, unknown 154.4
2464 Female, age 72, unknown 150.3
Periaquaductal grey, lateral
nTPM: 155.9
2272 Male, age 74, both hemispheres 160.2
2053 Male, age 18, unknown 156.3
2140 Male, age 76, both hemispheres 151.4
Pretectal area
nTPM: 159.6
1944 Female, age 72, unknown 164.5
1817 Female, age 42, unknown 163.9
2667 Female, age 75, unknown 163.9
2273 Male, age 74, both hemispheres 162.3
2224 Female, age 72, unknown 161.5
1816 Male, age 51, unknown 160.3
2007 Male, age 72, unknown 159.1
1815 Male, age 53, unknown 157.5
2825 Male, age 18, unknown 157.5
2407 Male, age 75, both hemispheres 153.1
2316 Male, age 76, right hemisphere 151.9
Red nucleus
nTPM: 157.9
1821 Female, age 72, unknown 170.7
1865 Male, age 51, unknown 160.2
2823 Male, age 76, right hemisphere 159.4
2725 Female, age 75, unknown 158.9
1954 Female, age 42, unknown 158.6
1904 Male, age 53, unknown 157.5
2503 Female, age 72, unknown 157.2
2769 Male, age 72, unknown 156.7
2785 Male, age 18, unknown 155.7
2227 Male, age 72, unknown 155.4
2584 Male, age 75, left hemisphere 155.0
2588 Male, age 74, left hemisphere 149.7
Substantia nigra
nTPM: 159.8
1889 Female, age 72, unknown 168.8
1916 Female, age 42, unknown 166.5
1941 Male, age 53, unknown 166.0
1851 Male, age 51, unknown 165.1
2699 Male, age 18, unknown 161.3
2241 Male, age 72, unknown 161.0
2409 Female, age 72, unknown 154.8
2665 Male, age 74, both hemispheres 152.7
2590 Female, age 75, unknown 152.0
2583 Male, age 75, right hemisphere 149.9
Superior colliculus
nTPM: 157.9
2587 Male, age 74, left hemisphere 164.4
1895 Male, age 76, right hemisphere 160.8
2668 Female, age 75, unknown 160.7
1913 Female, age 42, unknown 160.2
1796 Male, age 53, unknown 158.3
2087 Female, age 72, unknown 157.5
1839 Male, age 51, unknown 155.8
1995 Male, age 72, unknown 155.4
2261 Male, age 18, unknown 154.1
2664 Male, age 75, both hemispheres 151.3
Ventral tegmental area
nTPM: 159.0
1915 Female, age 42, unknown 164.0
2218 Male, age 76, both hemispheres 162.6
2223 Female, age 72, unknown 161.5
2410 Female, age 72, unknown 160.1
1942 Male, age 51, unknown 153.0
2021 Male, age 53, unknown 152.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 205.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.1
Samples: 139

Max nTPM: 360.4
Min nTPM: 125.0
Std nTPM: 41.5
Median nTPM: 194.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 360.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 347.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 301.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 298.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 297.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 297.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 295.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 291.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 289.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 283.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 280.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 202.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 202.8
FF:10158-103A5 76 years, female 202.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.7
Pig sample Sample description nTPM
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 149.1
Min nTPM: 101.1
Sample A Female 149.1
Sample B Female 101.1
Sample C Male 109.1
Sample D Male 110.1
Periaqueductal gray
nTPM: 97.5
Samples: 3

Max nTPM: 103.7
Min nTPM: 91.3
Sample B Female 91.3
Sample C Male 103.7
Sample D Male 97.5
Substantia nigra
nTPM: 106.1
Samples: 4

Max nTPM: 145.7
Min nTPM: 77.3
Sample A Female 145.7
Sample B Female 96.3
Sample C Male 105.0
Sample D Male 77.3
Superior colliculi
nTPM: 126.7
Samples: 4

Max nTPM: 164.0
Min nTPM: 104.1
Sample A Female 164.0
Sample B Female 104.1
Sample C Male 134.2
Sample D Male 104.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 45.1
Min nTPM: 34.9
Sample A Male 42.1
Sample B Male 35.6
Sample C Female 34.9
Sample D Female 45.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68745006 Antisense, RP_050210_01_A12, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.