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SNAP91
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:41.9 nTPM
FANTOM5:120.3 Scaled Tags Per Million
Pig:115.7 nTPM
Mouse:163.4 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Amygdala
nTPM: 6.1
2814 Male, age 76, right hemisphere 20.1
1987 Female, age 91, left hemisphere 10.8
2514 Male, age 75, right hemisphere 0.0
2517 Female, age 94, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 11.7
2243 Female, age 91, right hemisphere 22.3
1955 Male, age 76, both hemispheres 17.0
2110 Male, age 80, left hemisphere 16.1
2685 Female, age 94, left hemisphere 14.8
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 9.8
2239 Male, age 80, left hemisphere 19.9
1905 Male, age 76, both hemispheres 17.1
2701 Female, age 91, right hemisphere 12.1
2515 Male, age 75, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 16.2
2429 Female, age 94, left hemisphere 26.1
2829 Male, age 80, left hemisphere 24.6
2242 Female, age 91, right hemisphere 24.4
2240 Male, age 76, both hemispheres 17.4
2535 Female, age 67, right hemisphere 5.0
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 7.1
1883 Male, age 76, both hemispheres 27.6
2534 Female, age 94, left hemisphere 9.3
2255 Female, age 91, right hemisphere 3.5
2256 Male, age 80, left hemisphere 2.3
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 42.1
1974 Female, age 91, both hemispheres 60.6
2486 Female, age 94, both hemispheres 52.7
2201 Male, age 74, unknown 13.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 41.9
Samples: 152

Max nTPM: 102.5
Min nTPM: 1.8
Std nTPM: 21.3
Median nTPM: 37.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 102.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 100.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 96.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 94.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 87.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 85.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 81.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 81.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 81.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 78.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 75.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 73.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 73.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 71.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 71.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 68.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 68.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 66.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 65.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 64.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 63.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 63.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 62.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 60.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 60.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 60.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 59.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 58.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 58.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 57.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 56.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 56.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 55.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 54.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 54.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 53.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 52.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 51.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 51.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 51.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 49.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 48.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 48.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 47.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 47.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 46.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 45.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 45.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 44.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 44.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 44.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 43.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 43.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 42.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 42.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 42.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 42.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 41.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 40.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 40.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 38.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 38.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 38.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 37.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 37.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 37.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 37.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 36.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 36.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 36.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 35.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 34.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 34.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 34.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 34.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 33.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 33.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 33.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 31.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 31.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 30.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 30.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 29.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 28.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 28.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 28.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 27.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 27.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 25.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 25.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 24.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 24.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 24.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 24.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 24.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 23.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 23.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 23.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 23.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 22.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 22.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 21.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 21.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 21.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 21.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 21.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 20.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 19.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 19.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 19.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 18.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 18.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 17.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 16.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 16.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 15.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 13.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 12.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 11.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 11.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 10.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 9.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 9.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 120.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 120.3
FF:10151-102I7 76 years, female 120.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.7
Pig sample Sample description nTPM
Amygdala
nTPM: 115.7
Samples: 4

Max nTPM: 162.7
Min nTPM: 80.4
Sample A Female 162.7
Sample B Female 80.4
Sample C Male 107.1
Sample D Male 112.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 163.3
Samples: 4

Max nTPM: 171.8
Min nTPM: 155.6
Sample A Male 171.8
Sample B Male 155.6
Sample C Female 161.7
Sample D Female 164.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
984 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 10.2
985 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 4.2

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