MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:125.9 nTPM
HPA:125.9 nTPM
GTEx:91.4 nTPM
FANTOM5:404.5 Scaled Tags Per Million
Mouse:10.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.4
1830 Male, age 51, unknown 127.6
2411 Female, age 72, unknown 119.9
1833 Male, age 53, unknown 114.4
1870 Female, age 42, unknown 113.9
2019 Male, age 18, unknown 113.2
2828 Female, age 72, unknown 95.1
2666 Male, age 74, left hemisphere 86.3
2219 Male, age 76, both hemispheres 85.7
1827 Male, age 72, unknown 81.3
2586 Male, age 75, left hemisphere 76.4
Dorsal raphe nucleus
nTPM: 81.9
2750 Male, age 76, both hemispheres 120.7
2016 Female, age 72, unknown 87.9
1828 Male, age 53, unknown 78.8
2298 Female, age 72, unknown 61.0
2047 Male, age 72, unknown 60.8
Inferior colliculus
nTPM: 76.3
1890 Male, age 53, unknown 79.8
2849 Male, age 72, unknown 78.4
1848 Female, age 42, unknown 77.7
2097 Female, age 72, unknown 69.4
Median raphe nucleus
nTPM: 72.7
2220 Male, age 76, midline 72.7
Pedunculopontine tegmental nucleus
nTPM: 94.6
2334 Male, age 80, both hemispheres 99.0
2338 Male, age 61, both hemispheres 98.5
1921 Female, age 85, both hemispheres 86.2
Periaquaductal grey, anterior
nTPM: 70.8
2502 Female, age 75, unknown 78.6
1947 Male, age 18, unknown 73.2
1795 Male, age 51, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 65.5
2464 Female, age 72, unknown 86.0
1831 Male, age 72, unknown 67.8
2850 Male, age 76, both hemispheres 58.7
1840 Male, age 53, unknown 49.6
Periaquaductal grey, lateral
nTPM: 68.8
2272 Male, age 74, both hemispheres 75.1
2053 Male, age 18, unknown 72.7
2140 Male, age 76, both hemispheres 58.6
Pretectal area
nTPM: 74.7
2316 Male, age 76, right hemisphere 98.5
1815 Male, age 53, unknown 98.0
2407 Male, age 75, both hemispheres 84.3
1817 Female, age 42, unknown 80.3
2825 Male, age 18, unknown 75.4
2007 Male, age 72, unknown 74.8
2273 Male, age 74, both hemispheres 70.9
2224 Female, age 72, unknown 67.8
1944 Female, age 72, unknown 58.3
2667 Female, age 75, unknown 57.7
1816 Male, age 51, unknown 56.0
Red nucleus
nTPM: 125.9
1865 Male, age 51, unknown 147.6
2823 Male, age 76, right hemisphere 143.8
1904 Male, age 53, unknown 141.7
1821 Female, age 72, unknown 140.1
2503 Female, age 72, unknown 130.6
2227 Male, age 72, unknown 125.5
2769 Male, age 72, unknown 124.9
2785 Male, age 18, unknown 124.3
1954 Female, age 42, unknown 120.0
2725 Female, age 75, unknown 118.0
2588 Male, age 74, left hemisphere 105.1
2584 Male, age 75, left hemisphere 88.9
Substantia nigra
nTPM: 81.8
2409 Female, age 72, unknown 94.8
2590 Female, age 75, unknown 90.6
1851 Male, age 51, unknown 90.0
2583 Male, age 75, right hemisphere 87.0
1889 Female, age 72, unknown 85.4
2699 Male, age 18, unknown 85.1
2241 Male, age 72, unknown 79.8
1941 Male, age 53, unknown 75.9
1916 Female, age 42, unknown 64.9
2665 Male, age 74, both hemispheres 63.9
Superior colliculus
nTPM: 92.1
1995 Male, age 72, unknown 125.9
1913 Female, age 42, unknown 122.0
1895 Male, age 76, right hemisphere 117.0
2587 Male, age 74, left hemisphere 97.3
1839 Male, age 51, unknown 96.0
2668 Female, age 75, unknown 95.5
1796 Male, age 53, unknown 72.9
2087 Female, age 72, unknown 67.2
2261 Male, age 18, unknown 64.3
2664 Male, age 75, both hemispheres 63.4
Ventral tegmental area
nTPM: 89.4
2410 Female, age 72, unknown 109.0
2223 Female, age 72, unknown 103.9
2021 Male, age 53, unknown 86.1
1942 Male, age 51, unknown 81.1
1915 Female, age 42, unknown 78.7
2218 Male, age 76, both hemispheres 77.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.4
Samples: 139

Max nTPM: 243.7
Min nTPM: 23.9
Std nTPM: 42.3
Median nTPM: 84.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 243.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 221.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 210.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 207.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 197.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 173.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 170.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 166.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 164.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 162.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 161.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 404.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 404.5
FF:10158-103A5 76 years, female 404.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 10.6
Sample C Female 12.5
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68445107 Antisense, RP_050111_02_G09, Mouse strain C57BL/6J (56 days, male) 0.2
71015800 Antisense, RP_050725_02_G11, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.