We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
YBX1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • YBX1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.7 nTPM
HPA:141.7 nTPM
GTEx:192.8 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:92.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 141.7
Sample id Sample description nTPM
Amygdala
nTPM: 141.7
2695 Female, age 67, right hemisphere 158.9
1987 Female, age 91, left hemisphere 142.8
2814 Male, age 76, right hemisphere 142.8
2514 Male, age 75, right hemisphere 136.1
2517 Female, age 94, left hemisphere 127.8
Basal amygdala
nTPM: 132.5
2827 Female, age 67, right hemisphere 145.9
2609 Male, age 75, right hemisphere 137.0
1955 Male, age 76, both hemispheres 132.1
2110 Male, age 80, left hemisphere 130.2
2243 Female, age 91, right hemisphere 127.7
2685 Female, age 94, left hemisphere 122.2
Central amygdala
nTPM: 132.9
2826 Female, age 94, left hemisphere 138.7
1905 Male, age 76, both hemispheres 134.7
2515 Male, age 75, right hemisphere 130.7
2239 Male, age 80, left hemisphere 130.4
2701 Female, age 91, right hemisphere 130.2
Corticomedial amygdala
nTPM: 129.0
2535 Female, age 67, right hemisphere 134.3
2242 Female, age 91, right hemisphere 131.9
2829 Male, age 80, left hemisphere 130.3
2428 Male, age 75, right hemisphere 127.0
2240 Male, age 76, both hemispheres 126.5
2429 Female, age 94, left hemisphere 124.0
Lateral amygdala
nTPM: 133.4
2830 Female, age 67, right hemisphere 145.8
2256 Male, age 80, left hemisphere 138.0
2516 Male, age 75, right hemisphere 134.2
1883 Male, age 76, both hemispheres 132.4
2534 Female, age 94, left hemisphere 127.0
2255 Female, age 91, right hemisphere 123.0
Stria terminalis, bed nucleus
nTPM: 118.9
2201 Male, age 74, unknown 127.9
1974 Female, age 91, both hemispheres 116.9
2486 Female, age 94, both hemispheres 112.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 192.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 192.8
Samples: 152

Max nTPM: 512.2
Min nTPM: 89.2
Std nTPM: 63.6
Median nTPM: 180.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 512.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 425.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 360.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 357.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 357.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 329.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 319.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 317.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 306.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 284.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 282.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 281.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 276.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 274.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 267.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 266.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 261.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 258.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 258.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 255.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 254.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 247.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 246.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 246.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 246.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 245.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 243.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 243.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 242.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 241.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 241.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 241.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 236.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 235.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 233.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 233.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 226.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 224.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 221.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 221.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 219.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 216.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 213.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 209.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 209.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 208.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 207.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 205.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 205.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 204.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 203.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 202.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 201.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 198.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 196.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 196.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 195.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 195.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 194.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 193.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 192.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 192.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 190.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 188.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 187.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 187.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 186.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 186.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 185.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 185.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 184.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 184.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 183.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 181.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 180.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 180.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 180.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 180.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 177.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 177.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 176.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 175.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 175.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 171.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 170.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 169.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 169.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 167.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 167.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 165.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 164.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 163.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 162.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 162.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 161.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 160.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 157.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 156.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 155.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 153.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 148.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 148.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 147.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 144.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 143.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 142.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 137.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 136.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 133.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 133.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 132.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 131.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 131.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 130.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 126.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 126.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 126.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 126.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 121.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 119.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 117.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 105.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 105.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 104.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 89.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 23.7
FF:10151-102I7 76 years, female 23.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.2
Pig sample Sample description nTPM
Amygdala
nTPM: 92.2
Samples: 4

Max nTPM: 103.6
Min nTPM: 76.8
Sample A Female 101.6
Sample B Female 103.6
Sample C Male 86.6
Sample D Male 76.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.