MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:160.2 nTPM
HPA:160.2 nTPM
GTEx:230.2 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:148.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 160.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.5
1870 Female, age 42, unknown 155.3
2828 Female, age 72, unknown 153.4
2666 Male, age 74, left hemisphere 148.7
1830 Male, age 51, unknown 143.0
1833 Male, age 53, unknown 141.2
2019 Male, age 18, unknown 140.9
2219 Male, age 76, both hemispheres 140.9
1827 Male, age 72, unknown 132.8
2586 Male, age 75, left hemisphere 131.0
2411 Female, age 72, unknown 127.6
Dorsal raphe nucleus
nTPM: 136.9
2016 Female, age 72, unknown 146.2
2750 Male, age 76, both hemispheres 145.0
1828 Male, age 53, unknown 135.5
2047 Male, age 72, unknown 129.1
2298 Female, age 72, unknown 128.6
Inferior colliculus
nTPM: 136.2
1890 Male, age 53, unknown 141.1
2849 Male, age 72, unknown 140.7
1848 Female, age 42, unknown 136.2
2097 Female, age 72, unknown 126.9
Median raphe nucleus
nTPM: 138.6
2220 Male, age 76, midline 138.6
Pedunculopontine tegmental nucleus
nTPM: 160.2
2338 Male, age 61, both hemispheres 196.6
2334 Male, age 80, both hemispheres 153.3
1921 Female, age 85, both hemispheres 130.6
Periaquaductal grey, anterior
nTPM: 133.8
2502 Female, age 75, unknown 138.7
1795 Male, age 51, unknown 133.4
1947 Male, age 18, unknown 129.3
Periaquaductal grey, dorsal
nTPM: 136.1
2850 Male, age 76, both hemispheres 147.0
1831 Male, age 72, unknown 142.6
1840 Male, age 53, unknown 128.9
2464 Female, age 72, unknown 125.7
Periaquaductal grey, lateral
nTPM: 138.1
2053 Male, age 18, unknown 140.9
2272 Male, age 74, both hemispheres 140.9
2140 Male, age 76, both hemispheres 132.7
Pretectal area
nTPM: 138.0
1817 Female, age 42, unknown 144.3
1815 Male, age 53, unknown 144.0
2316 Male, age 76, right hemisphere 140.4
2273 Male, age 74, both hemispheres 140.1
2407 Male, age 75, both hemispheres 138.7
2667 Female, age 75, unknown 138.7
2825 Male, age 18, unknown 136.4
2224 Female, age 72, unknown 136.2
2007 Male, age 72, unknown 135.5
1944 Female, age 72, unknown 135.3
1816 Male, age 51, unknown 127.9
Red nucleus
nTPM: 154.9
2503 Female, age 72, unknown 168.4
1865 Male, age 51, unknown 167.3
2725 Female, age 75, unknown 162.8
1904 Male, age 53, unknown 160.6
2227 Male, age 72, unknown 156.8
2769 Male, age 72, unknown 156.6
1954 Female, age 42, unknown 154.4
1821 Female, age 72, unknown 154.2
2823 Male, age 76, right hemisphere 150.3
2785 Male, age 18, unknown 149.7
2584 Male, age 75, left hemisphere 139.6
2588 Male, age 74, left hemisphere 138.7
Substantia nigra
nTPM: 142.2
2699 Male, age 18, unknown 170.7
2665 Male, age 74, both hemispheres 152.9
1851 Male, age 51, unknown 148.5
1916 Female, age 42, unknown 144.3
1889 Female, age 72, unknown 140.9
2590 Female, age 75, unknown 137.2
1941 Male, age 53, unknown 136.1
2583 Male, age 75, right hemisphere 136.0
2409 Female, age 72, unknown 130.8
2241 Male, age 72, unknown 124.8
Superior colliculus
nTPM: 140.7
1913 Female, age 42, unknown 166.8
1995 Male, age 72, unknown 164.8
2587 Male, age 74, left hemisphere 153.8
1895 Male, age 76, right hemisphere 137.3
1839 Male, age 51, unknown 136.5
1796 Male, age 53, unknown 133.8
2668 Female, age 75, unknown 131.1
2664 Male, age 75, both hemispheres 130.4
2087 Female, age 72, unknown 127.7
2261 Male, age 18, unknown 125.0
Ventral tegmental area
nTPM: 142.1
2218 Male, age 76, both hemispheres 145.5
1915 Female, age 42, unknown 145.1
2021 Male, age 53, unknown 144.7
2223 Female, age 72, unknown 144.0
1942 Male, age 51, unknown 137.7
2410 Female, age 72, unknown 135.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 230.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 230.2
Samples: 139

Max nTPM: 401.4
Min nTPM: 75.2
Std nTPM: 66.5
Median nTPM: 221.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 401.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 395.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 375.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 372.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 362.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 362.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 358.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 355.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 349.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 339.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 329.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 148.7
Pig sample Sample description nTPM
Midbrain
nTPM: 145.6
Samples: 4

Max nTPM: 239.9
Min nTPM: 94.2
Sample A Female 239.9
Sample B Female 146.6
Sample C Male 101.7
Sample D Male 94.2
Periaqueductal gray
nTPM: 124.6
Samples: 3

Max nTPM: 130.0
Min nTPM: 121.2
Sample B Female 130.0
Sample C Male 122.5
Sample D Male 121.2
Substantia nigra
nTPM: 148.7
Samples: 4

Max nTPM: 175.6
Min nTPM: 122.4
Sample A Female 132.6
Sample B Female 164.0
Sample C Male 122.4
Sample D Male 175.6
Superior colliculi
nTPM: 148.2
Samples: 4

Max nTPM: 178.7
Min nTPM: 128.3
Sample A Female 144.2
Sample B Female 178.7
Sample C Male 128.3
Sample D Male 141.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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