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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:74.1 nTPM
HPA:74.1 nTPM
GTEx:84.8 nTPM
FANTOM5:160.9 Scaled Tags Per Million
Mouse:80.1 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 74.1
Sample id Sample description nTPM
Amygdala
nTPM: 74.1
2517 Female, age 94, left hemisphere 80.9
2514 Male, age 75, right hemisphere 79.6
2814 Male, age 76, right hemisphere 74.6
1987 Female, age 91, left hemisphere 73.8
2695 Female, age 67, right hemisphere 61.5
Basal amygdala
nTPM: 66.7
2609 Male, age 75, right hemisphere 80.2
1955 Male, age 76, both hemispheres 75.7
2685 Female, age 94, left hemisphere 71.9
2243 Female, age 91, right hemisphere 69.1
2110 Male, age 80, left hemisphere 56.1
2827 Female, age 67, right hemisphere 46.8
Central amygdala
nTPM: 70.4
1905 Male, age 76, both hemispheres 82.9
2826 Female, age 94, left hemisphere 72.0
2239 Male, age 80, left hemisphere 67.0
2701 Female, age 91, right hemisphere 65.3
2515 Male, age 75, right hemisphere 64.8
Corticomedial amygdala
nTPM: 67.9
2240 Male, age 76, both hemispheres 80.3
2429 Female, age 94, left hemisphere 78.3
2428 Male, age 75, right hemisphere 72.5
2829 Male, age 80, left hemisphere 62.4
2242 Female, age 91, right hemisphere 61.3
2535 Female, age 67, right hemisphere 52.4
Lateral amygdala
nTPM: 67.8
2516 Male, age 75, right hemisphere 86.5
1883 Male, age 76, both hemispheres 72.9
2534 Female, age 94, left hemisphere 72.4
2255 Female, age 91, right hemisphere 70.9
2256 Male, age 80, left hemisphere 63.5
2830 Female, age 67, right hemisphere 40.4
Stria terminalis, bed nucleus
nTPM: 67.7
2486 Female, age 94, both hemispheres 75.2
1974 Female, age 91, both hemispheres 74.6
2201 Male, age 74, unknown 53.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.8
Samples: 152

Max nTPM: 170.5
Min nTPM: 4.4
Std nTPM: 29.2
Median nTPM: 82.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 170.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 157.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 154.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 134.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 133.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 133.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 132.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 130.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 128.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 128.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 124.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 122.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 121.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 117.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 114.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 112.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 110.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 109.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 109.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 107.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 107.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 105.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 104.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 103.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 102.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 101.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 100.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 100.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 98.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 98.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 98.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 93.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 91.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 91.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 91.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 90.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 89.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 88.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 88.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 87.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 85.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 82.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 82.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 82.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 82.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 80.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 80.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 79.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 77.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 77.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 75.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 73.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 73.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 73.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 72.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 70.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 69.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 68.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 67.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 66.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 66.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 66.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 66.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 64.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 63.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 63.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 62.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 59.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 58.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 58.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 57.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 57.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 55.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 54.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 51.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 51.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 49.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 49.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 44.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 42.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 40.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 40.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 39.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 36.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 33.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 21.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 160.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 160.9
FF:10151-102I7 76 years, female 160.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 80.1
Samples: 4

Max nTPM: 84.7
Min nTPM: 77.4
Sample A Male 77.4
Sample B Male 78.8
Sample C Female 84.7
Sample D Female 79.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
73513660 Antisense, RP_051121_02_E02, Mouse strain C57BL/6J (56 days, male) 1.1
74363355 Antisense, RP_051121_02_E02, Mouse strain C57BL/6J (56 days, male) 1.0

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