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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:27.6 nTPM
GTEx:21.2 nTPM
FANTOM5:38.6 Scaled Tags Per Million
Pig:24.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 27.6
Sample id Sample description nTPM
Putamen
nTPM: 27.6
1838 Male, age 80, right hemisphere 29.7
2466 Female, age 79, unknown 29.4
2489 Female, age 72, unknown 29.2
1829 Male, age 74, unknown 28.0
1937 Female, age 91, right hemisphere 27.9
2647 Male, age 75, left hemisphere 24.9
2482 Female, age 94, left hemisphere 24.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 21.2
Samples: 205

Max nTPM: 34.4
Min nTPM: 10.9
Std nTPM: 3.8
Median nTPM: 21.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 34.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 31.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 30.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 29.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 29.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 29.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 28.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 28.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 27.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 27.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 27.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 27.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 27.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 27.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 27.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 26.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 26.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 26.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 26.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 26.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 26.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 26.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 26.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 25.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 25.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 25.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 25.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 25.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 25.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 25.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 25.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 25.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 24.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 24.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 24.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 24.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 24.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 24.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 24.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 24.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 24.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 24.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 24.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 24.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 24.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 24.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 24.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 23.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 23.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 23.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 23.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 23.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 23.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 23.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 23.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 23.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 23.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 23.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 23.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 23.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 23.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 23.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 23.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 23.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 22.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 22.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 22.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 22.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 22.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 22.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 22.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 22.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 22.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 22.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 22.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 22.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 22.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 22.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 22.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 22.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 21.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 21.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 21.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 21.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 21.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 21.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 21.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 21.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 21.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 21.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 21.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 21.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 21.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 21.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 21.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 21.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 21.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 21.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 21.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 21.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 21.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 21.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 21.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 21.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 20.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 20.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 20.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 20.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 20.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 20.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 20.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 20.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 20.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 20.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 20.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 20.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 20.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 20.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 20.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 20.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 20.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 20.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 20.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 20.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 20.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 20.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 19.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 19.9
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 19.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 19.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 19.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 19.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 19.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 19.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 19.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 19.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 19.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 19.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 19.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 19.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 19.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 19.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 19.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 19.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 18.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 18.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 18.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 18.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 18.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 18.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 18.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 18.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 18.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 18.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 18.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 17.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 17.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 17.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 17.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 17.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 17.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 17.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 17.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 17.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 17.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 17.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 17.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 17.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 17.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 17.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 17.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 17.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 16.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 16.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 16.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 16.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 16.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 16.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 16.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 16.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 16.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 16.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 16.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 16.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 16.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 16.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 16.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 15.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 15.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 15.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 15.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 15.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 15.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 14.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 14.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 14.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 13.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 13.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 13.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 10.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 38.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 38.6
FF:10176-103C5 60 years, female 38.6

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.0
Pig sample Sample description nTPM
Putamen
nTPM: 24.0
Samples: 4

Max nTPM: 29.3
Min nTPM: 21.9
Sample A Female 21.9
Sample B Female 22.5
Sample C Male 22.2
Sample D Male 29.3

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