MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:110.1 nTPM
HPA:110.1 nTPM
GTEx:130.4 nTPM
FANTOM5:233.2 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:49.2 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.6
1870 Female, age 42, unknown 117.9
2411 Female, age 72, unknown 115.7
1830 Male, age 51, unknown 113.6
2019 Male, age 18, unknown 110.6
1833 Male, age 53, unknown 106.9
2828 Female, age 72, unknown 96.1
1827 Male, age 72, unknown 80.9
2219 Male, age 76, both hemispheres 79.5
2586 Male, age 75, left hemisphere 78.3
2666 Male, age 74, left hemisphere 77.0
Dorsal raphe nucleus
nTPM: 86.8
2750 Male, age 76, both hemispheres 125.3
2016 Female, age 72, unknown 84.6
1828 Male, age 53, unknown 82.8
2298 Female, age 72, unknown 70.7
2047 Male, age 72, unknown 70.6
Inferior colliculus
nTPM: 82.5
1890 Male, age 53, unknown 85.5
1848 Female, age 42, unknown 85.4
2849 Male, age 72, unknown 80.7
2097 Female, age 72, unknown 78.3
Median raphe nucleus
nTPM: 83.6
2220 Male, age 76, midline 83.6
Pedunculopontine tegmental nucleus
nTPM: 95.8
2338 Male, age 61, both hemispheres 102.1
2334 Male, age 80, both hemispheres 97.2
1921 Female, age 85, both hemispheres 88.1
Periaquaductal grey, anterior
nTPM: 75.7
2502 Female, age 75, unknown 80.7
1947 Male, age 18, unknown 76.5
1795 Male, age 51, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 71.7
2464 Female, age 72, unknown 84.5
1831 Male, age 72, unknown 74.8
1840 Male, age 53, unknown 63.8
2850 Male, age 76, both hemispheres 63.7
Periaquaductal grey, lateral
nTPM: 74.9
2272 Male, age 74, both hemispheres 81.5
2053 Male, age 18, unknown 79.3
2140 Male, age 76, both hemispheres 63.9
Pretectal area
nTPM: 79.6
2316 Male, age 76, right hemisphere 89.9
1815 Male, age 53, unknown 88.0
2407 Male, age 75, both hemispheres 87.9
2273 Male, age 74, both hemispheres 81.7
2825 Male, age 18, unknown 81.7
1817 Female, age 42, unknown 81.6
2667 Female, age 75, unknown 81.5
2007 Male, age 72, unknown 78.3
2224 Female, age 72, unknown 72.0
1944 Female, age 72, unknown 67.0
1816 Male, age 51, unknown 65.4
Red nucleus
nTPM: 110.1
1865 Male, age 51, unknown 129.7
1821 Female, age 72, unknown 125.4
2769 Male, age 72, unknown 120.0
2823 Male, age 76, right hemisphere 119.6
1904 Male, age 53, unknown 119.2
2227 Male, age 72, unknown 115.2
2785 Male, age 18, unknown 112.8
1954 Female, age 42, unknown 108.3
2503 Female, age 72, unknown 99.7
2588 Male, age 74, left hemisphere 93.9
2584 Male, age 75, left hemisphere 93.1
2725 Female, age 75, unknown 83.6
Substantia nigra
nTPM: 82.3
2583 Male, age 75, right hemisphere 92.2
1851 Male, age 51, unknown 90.2
2590 Female, age 75, unknown 87.7
2409 Female, age 72, unknown 87.6
1889 Female, age 72, unknown 87.4
2699 Male, age 18, unknown 79.5
1941 Male, age 53, unknown 76.8
1916 Female, age 42, unknown 76.6
2241 Male, age 72, unknown 76.4
2665 Male, age 74, both hemispheres 68.9
Superior colliculus
nTPM: 89.4
1913 Female, age 42, unknown 118.2
1995 Male, age 72, unknown 112.0
2587 Male, age 74, left hemisphere 96.4
1895 Male, age 76, right hemisphere 93.7
1839 Male, age 51, unknown 90.0
2668 Female, age 75, unknown 88.6
1796 Male, age 53, unknown 81.6
2087 Female, age 72, unknown 74.9
2664 Male, age 75, both hemispheres 70.2
2261 Male, age 18, unknown 67.9
Ventral tegmental area
nTPM: 92.3
2223 Female, age 72, unknown 115.8
2410 Female, age 72, unknown 96.5
2218 Male, age 76, both hemispheres 87.7
2021 Male, age 53, unknown 85.4
1942 Male, age 51, unknown 85.0
1915 Female, age 42, unknown 83.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.4
Samples: 139

Max nTPM: 482.4
Min nTPM: 43.1
Std nTPM: 80.8
Median nTPM: 108.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 482.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 430.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 418.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 380.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 375.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 361.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 344.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 289.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 273.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 269.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 242.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 233.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.2
FF:10158-103A5 76 years, female 233.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.9
Pig sample Sample description nTPM
Midbrain
nTPM: 91.9
Samples: 4

Max nTPM: 236.5
Min nTPM: 36.1
Sample A Female 236.5
Sample B Female 56.5
Sample C Male 38.4
Sample D Male 36.1
Periaqueductal gray
nTPM: 40.3
Samples: 3

Max nTPM: 45.9
Min nTPM: 31.5
Sample B Female 45.9
Sample C Male 31.5
Sample D Male 43.4
Substantia nigra
nTPM: 73.1
Samples: 4

Max nTPM: 124.4
Min nTPM: 43.3
Sample A Female 68.9
Sample B Female 43.3
Sample C Male 55.7
Sample D Male 124.4
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 71.9
Min nTPM: 36.7
Sample A Female 63.7
Sample B Female 36.7
Sample C Male 62.2
Sample D Male 71.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 56.7
Min nTPM: 42.7
Sample A Male 44.8
Sample B Male 42.7
Sample C Female 52.5
Sample D Female 56.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69671989 Antisense, RP_050428_02_G06, Mouse strain C57BL/6J (56 days, male) 1.4
74882527 Antisense, RP_060315_04_E12, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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