MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:185.9 nTPM
HPA:185.9 nTPM
GTEx:200.1 nTPM
FANTOM5:156.3 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:48.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 185.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.2
2019 Male, age 18, unknown 173.8
1830 Male, age 51, unknown 169.6
2411 Female, age 72, unknown 157.7
1833 Male, age 53, unknown 150.9
1870 Female, age 42, unknown 143.5
2828 Female, age 72, unknown 124.8
2586 Male, age 75, left hemisphere 112.1
2666 Male, age 74, left hemisphere 108.0
1827 Male, age 72, unknown 106.5
2219 Male, age 76, both hemispheres 105.1
Dorsal raphe nucleus
nTPM: 114.9
2750 Male, age 76, both hemispheres 176.4
1828 Male, age 53, unknown 115.6
2016 Female, age 72, unknown 106.6
2047 Male, age 72, unknown 94.5
2298 Female, age 72, unknown 81.6
Inferior colliculus
nTPM: 108.6
1890 Male, age 53, unknown 122.5
1848 Female, age 42, unknown 110.1
2849 Male, age 72, unknown 102.8
2097 Female, age 72, unknown 99.2
Median raphe nucleus
nTPM: 123.8
2220 Male, age 76, midline 123.8
Pedunculopontine tegmental nucleus
nTPM: 143.8
2338 Male, age 61, both hemispheres 176.0
2334 Male, age 80, both hemispheres 138.2
1921 Female, age 85, both hemispheres 117.4
Periaquaductal grey, anterior
nTPM: 94.9
2502 Female, age 75, unknown 101.0
1947 Male, age 18, unknown 99.2
1795 Male, age 51, unknown 84.4
Periaquaductal grey, dorsal
nTPM: 88.9
2464 Female, age 72, unknown 111.8
1831 Male, age 72, unknown 91.6
2850 Male, age 76, both hemispheres 78.6
1840 Male, age 53, unknown 73.6
Periaquaductal grey, lateral
nTPM: 93.1
2272 Male, age 74, both hemispheres 103.7
2053 Male, age 18, unknown 93.1
2140 Male, age 76, both hemispheres 82.3
Pretectal area
nTPM: 102.0
2316 Male, age 76, right hemisphere 123.0
1815 Male, age 53, unknown 114.4
2007 Male, age 72, unknown 111.0
1817 Female, age 42, unknown 110.1
2407 Male, age 75, both hemispheres 104.3
2273 Male, age 74, both hemispheres 102.8
2825 Male, age 18, unknown 99.9
2667 Female, age 75, unknown 96.7
2224 Female, age 72, unknown 88.5
1944 Female, age 72, unknown 87.5
1816 Male, age 51, unknown 83.4
Red nucleus
nTPM: 185.9
1865 Male, age 51, unknown 213.2
1904 Male, age 53, unknown 211.7
2823 Male, age 76, right hemisphere 208.4
2769 Male, age 72, unknown 201.8
2227 Male, age 72, unknown 199.4
1821 Female, age 72, unknown 193.1
2785 Male, age 18, unknown 184.7
2503 Female, age 72, unknown 184.6
1954 Female, age 42, unknown 182.9
2588 Male, age 74, left hemisphere 168.8
2584 Male, age 75, left hemisphere 141.5
2725 Female, age 75, unknown 140.6
Substantia nigra
nTPM: 114.1
2583 Male, age 75, right hemisphere 142.3
1851 Male, age 51, unknown 124.4
1889 Female, age 72, unknown 123.2
2409 Female, age 72, unknown 122.7
2590 Female, age 75, unknown 120.2
1941 Male, age 53, unknown 114.7
2699 Male, age 18, unknown 107.5
2241 Male, age 72, unknown 97.3
1916 Female, age 42, unknown 94.6
2665 Male, age 74, both hemispheres 93.7
Superior colliculus
nTPM: 117.0
1995 Male, age 72, unknown 147.3
1913 Female, age 42, unknown 146.3
1895 Male, age 76, right hemisphere 135.9
2587 Male, age 74, left hemisphere 128.5
2668 Female, age 75, unknown 127.3
1839 Male, age 51, unknown 118.5
1796 Male, age 53, unknown 98.6
2087 Female, age 72, unknown 93.3
2261 Male, age 18, unknown 89.4
2664 Male, age 75, both hemispheres 84.8
Ventral tegmental area
nTPM: 138.6
2223 Female, age 72, unknown 219.3
2410 Female, age 72, unknown 158.1
2218 Male, age 76, both hemispheres 124.6
1942 Male, age 51, unknown 117.6
2021 Male, age 53, unknown 107.7
1915 Female, age 42, unknown 104.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 200.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.1
Samples: 139

Max nTPM: 791.4
Min nTPM: 46.3
Std nTPM: 120.2
Median nTPM: 169.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 791.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 739.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 553.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 515.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 429.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 423.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 391.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 381.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 377.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 370.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 362.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.3
FF:10158-103A5 76 years, female 156.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.4
Pig sample Sample description nTPM
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 88.5
Min nTPM: 27.0
Sample A Female 88.5
Sample B Female 36.6
Sample C Male 27.0
Sample D Male 29.3
Periaqueductal gray
nTPM: 30.7
Samples: 3

Max nTPM: 33.9
Min nTPM: 24.9
Sample B Female 33.9
Sample C Male 24.9
Sample D Male 33.2
Substantia nigra
nTPM: 43.0
Samples: 4

Max nTPM: 66.8
Min nTPM: 28.4
Sample A Female 41.7
Sample B Female 28.4
Sample C Male 34.9
Sample D Male 66.8
Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 45.5
Min nTPM: 37.8
Sample A Female 44.6
Sample B Female 39.0
Sample C Male 37.8
Sample D Male 45.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.8
Samples: 4

Max nTPM: 55.0
Min nTPM: 45.2
Sample A Male 49.1
Sample B Male 55.0
Sample C Female 45.2
Sample D Female 45.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
100145368 Antisense, RP_110519_03_D04, Mouse strain C57BL/6J (56 days, male) 2.8
445 Antisense, RP_Baylor_102780, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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