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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:218.0 nTPM
HPA:163.6 nTPM
GTEx:218.0 nTPM
FANTOM5:431.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029501Antibody CAB019421
Glandular cells LowMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 163.6
overview
Male, age 65
Small intestine sample 232
nTPM: 136.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 196.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 154.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 167.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 218.0
Samples: 187

Max nTPM: 537.4
Min nTPM: 72.4
Std nTPM: 62.4
Median nTPM: 217.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 537.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 416.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 370.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 370.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 366.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 357.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 354.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 347.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 329.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 321.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 320.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 319.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 315.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 309.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 300.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 300.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 299.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 299.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 295.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 293.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 292.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 288.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 286.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 282.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 278.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 277.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 277.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 277.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 274.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 272.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 270.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 268.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 260.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 259.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 258.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 258.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 257.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 256.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 255.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 253.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 253.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 252.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 252.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 251.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 247.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 246.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 246.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 245.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 245.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 244.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 242.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 242.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 240.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 239.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 238.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 237.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 237.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 237.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 236.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 235.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 235.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 234.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 233.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 232.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 231.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 231.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 231.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 230.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 230.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 230.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 230.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 229.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 229.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 228.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 227.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 225.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 224.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 223.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 222.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 222.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 221.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 221.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 220.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 219.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 219.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 219.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 219.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 219.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 218.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 218.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 218.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 217.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 217.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 217.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 216.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 216.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 216.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 215.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 214.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 214.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 210.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 210.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 210.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 208.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 208.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 206.2
GTEX-1192X-2526-SM-59868 50-59 years, male 204.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 203.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 203.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 202.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 202.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 202.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 201.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 199.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 198.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 196.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 195.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 195.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 194.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 194.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 194.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 193.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 193.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 193.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 191.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 190.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 189.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 189.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 189.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 189.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 186.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 186.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 184.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 184.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 183.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 182.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 181.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 181.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 180.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 180.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 179.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 178.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 177.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 177.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 177.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 176.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 176.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 170.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 170.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 170.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 168.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 168.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 166.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 165.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 164.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 163.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 163.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 161.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 159.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 159.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 156.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 155.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 152.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 151.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 150.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 148.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 145.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 143.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 141.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 141.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 140.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 139.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 136.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 135.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 133.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 131.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 129.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 129.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 127.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 125.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 125.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 124.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 121.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 109.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 92.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 74.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 72.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 431.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 431.4
FF:10024-101D6 15,40,85 years, mixed 431.4

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