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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:89.3 nTPM
GTEx:165.5 nTPM
FANTOM5:172.7 Scaled Tags Per Million
Pig:76.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 89.3
Sample id Sample description nTPM
Putamen
nTPM: 89.3
1838 Male, age 80, right hemisphere 102.3
1829 Male, age 74, unknown 100.3
2489 Female, age 72, unknown 99.0
2466 Female, age 79, unknown 97.0
2647 Male, age 75, left hemisphere 89.4
1937 Female, age 91, right hemisphere 85.3
2482 Female, age 94, left hemisphere 51.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 165.5
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 165.5
Samples: 205

Max nTPM: 394.4
Min nTPM: 23.9
Std nTPM: 88.4
Median nTPM: 165.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 394.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 383.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 376.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 372.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 371.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 369.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 359.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 344.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 343.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 341.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 332.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 320.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 315.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 313.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 307.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 302.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 301.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 301.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 296.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 286.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 285.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 283.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 280.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 276.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 274.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 269.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 268.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 268.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 265.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 264.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 263.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 258.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 257.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 251.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 250.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 247.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 246.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 241.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 235.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 234.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 232.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 231.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 229.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 229.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 227.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 225.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 222.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 221.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 220.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 219.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 218.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 218.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 217.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 216.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 216.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 216.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 216.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 213.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 212.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 211.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 211.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 210.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 210.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 210.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 207.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 206.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 202.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 201.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 201.3
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 199.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 197.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 197.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 196.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 196.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 196.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 191.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 191.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 190.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 188.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 188.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 188.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 187.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 187.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 186.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 184.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 183.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 182.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 181.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 180.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 180.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 180.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 178.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 176.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 176.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 175.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 174.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 173.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 173.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 172.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 171.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 169.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 166.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 165.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 163.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 161.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 161.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 160.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 160.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 159.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 156.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 154.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 153.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 150.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 149.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 148.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 147.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 147.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 143.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 141.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 139.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 137.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 136.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 135.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 133.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 133.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 133.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 132.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 132.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 131.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 128.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 128.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 127.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 126.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 125.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 124.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 122.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 116.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 112.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 112.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 109.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 107.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 106.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 106.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 104.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 104.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 104.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 103.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 103.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 101.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 101.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 100.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 99.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 97.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 96.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 95.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 95.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 91.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 90.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 90.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 83.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 83.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 81.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 78.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 77.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 72.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 72.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 71.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 70.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 68.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 68.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 65.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 64.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 64.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 61.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 61.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 60.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 60.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 59.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 58.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 58.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 58.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 55.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 54.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 54.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 51.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 48.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 48.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 43.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 43.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 42.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 41.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 38.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 37.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 37.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 37.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 36.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 31.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 31.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 29.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 28.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 27.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 26.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 25.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 25.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 23.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 172.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 172.7
FF:10176-103C5 60 years, female 172.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.0
Pig sample Sample description nTPM
Putamen
nTPM: 76.0
Samples: 4

Max nTPM: 99.7
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 90.4
Sample C Male 99.7
Sample D Male 82.7

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