MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:122.2 nTPM
HPA:122.2 nTPM
GTEx:96.5 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:129.1 nTPM
Mouse:297.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.0
2019 Male, age 18, unknown 114.0
1827 Male, age 72, unknown 113.6
2828 Female, age 72, unknown 113.5
1870 Female, age 42, unknown 112.7
1833 Male, age 53, unknown 109.8
2666 Male, age 74, left hemisphere 108.8
1830 Male, age 51, unknown 107.1
2411 Female, age 72, unknown 107.0
2586 Male, age 75, left hemisphere 102.1
2219 Male, age 76, both hemispheres 101.3
Dorsal raphe nucleus
nTPM: 122.2
2298 Female, age 72, unknown 133.9
2016 Female, age 72, unknown 123.0
1828 Male, age 53, unknown 122.7
2047 Male, age 72, unknown 118.2
2750 Male, age 76, both hemispheres 113.1
Inferior colliculus
nTPM: 115.0
2097 Female, age 72, unknown 123.4
1890 Male, age 53, unknown 114.5
1848 Female, age 42, unknown 112.3
2849 Male, age 72, unknown 109.7
Median raphe nucleus
nTPM: 114.4
2220 Male, age 76, midline 114.4
Pedunculopontine tegmental nucleus
nTPM: 116.4
2334 Male, age 80, both hemispheres 118.4
2338 Male, age 61, both hemispheres 116.1
1921 Female, age 85, both hemispheres 114.7
Periaquaductal grey, anterior
nTPM: 116.0
1947 Male, age 18, unknown 120.1
1795 Male, age 51, unknown 114.4
2502 Female, age 75, unknown 113.6
Periaquaductal grey, dorsal
nTPM: 120.2
2850 Male, age 76, both hemispheres 135.2
1840 Male, age 53, unknown 118.3
1831 Male, age 72, unknown 114.8
2464 Female, age 72, unknown 112.6
Periaquaductal grey, lateral
nTPM: 119.6
2140 Male, age 76, both hemispheres 125.2
2272 Male, age 74, both hemispheres 121.3
2053 Male, age 18, unknown 112.1
Pretectal area
nTPM: 117.2
2273 Male, age 74, both hemispheres 129.6
2224 Female, age 72, unknown 124.7
2667 Female, age 75, unknown 122.8
1817 Female, age 42, unknown 120.4
1816 Male, age 51, unknown 119.4
1815 Male, age 53, unknown 116.0
1944 Female, age 72, unknown 114.3
2316 Male, age 76, right hemisphere 113.7
2007 Male, age 72, unknown 112.7
2825 Male, age 18, unknown 111.9
2407 Male, age 75, both hemispheres 103.2
Red nucleus
nTPM: 109.9
1821 Female, age 72, unknown 119.6
2725 Female, age 75, unknown 115.1
2823 Male, age 76, right hemisphere 114.9
1954 Female, age 42, unknown 113.3
2503 Female, age 72, unknown 111.2
1904 Male, age 53, unknown 110.1
2785 Male, age 18, unknown 109.7
2227 Male, age 72, unknown 109.1
2769 Male, age 72, unknown 108.5
1865 Male, age 51, unknown 107.9
2588 Male, age 74, left hemisphere 99.7
2584 Male, age 75, left hemisphere 99.5
Substantia nigra
nTPM: 117.3
2241 Male, age 72, unknown 125.1
1916 Female, age 42, unknown 123.1
2665 Male, age 74, both hemispheres 121.0
1851 Male, age 51, unknown 120.5
2699 Male, age 18, unknown 120.5
1889 Female, age 72, unknown 117.2
1941 Male, age 53, unknown 116.2
2409 Female, age 72, unknown 114.6
2590 Female, age 75, unknown 111.2
2583 Male, age 75, right hemisphere 103.6
Superior colliculus
nTPM: 112.0
2587 Male, age 74, left hemisphere 117.6
1995 Male, age 72, unknown 117.1
2087 Female, age 72, unknown 115.5
1796 Male, age 53, unknown 113.2
1839 Male, age 51, unknown 112.4
1913 Female, age 42, unknown 112.1
2261 Male, age 18, unknown 110.2
1895 Male, age 76, right hemisphere 108.9
2668 Female, age 75, unknown 108.6
2664 Male, age 75, both hemispheres 104.7
Ventral tegmental area
nTPM: 115.1
1915 Female, age 42, unknown 119.1
2218 Male, age 76, both hemispheres 117.3
2410 Female, age 72, unknown 115.1
1942 Male, age 51, unknown 113.6
2021 Male, age 53, unknown 113.0
2223 Female, age 72, unknown 112.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.5
Samples: 139

Max nTPM: 212.9
Min nTPM: 46.7
Std nTPM: 31.8
Median nTPM: 88.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 212.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 211.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 208.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 190.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 188.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 179.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 166.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 155.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 155.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 155.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 146.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.3
FF:10158-103A5 76 years, female 110.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.1
Pig sample Sample description nTPM
Midbrain
nTPM: 105.2
Samples: 4

Max nTPM: 117.1
Min nTPM: 92.0
Sample A Female 117.1
Sample B Female 110.9
Sample C Male 92.0
Sample D Male 100.9
Periaqueductal gray
nTPM: 107.6
Samples: 3

Max nTPM: 123.8
Min nTPM: 92.1
Sample B Female 92.1
Sample C Male 123.8
Sample D Male 106.9
Substantia nigra
nTPM: 124.9
Samples: 4

Max nTPM: 150.4
Min nTPM: 88.6
Sample A Female 150.4
Sample B Female 136.5
Sample C Male 123.9
Sample D Male 88.6
Superior colliculi
nTPM: 129.1
Samples: 4

Max nTPM: 181.7
Min nTPM: 93.3
Sample A Female 147.8
Sample B Female 181.7
Sample C Male 93.5
Sample D Male 93.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 297.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 297.6
Samples: 4

Max nTPM: 316.3
Min nTPM: 282.2
Sample A Male 316.3
Sample B Male 288.7
Sample C Female 282.2
Sample D Female 303.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.