BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:30.1 nTPM
FANTOM5:186.9 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:115.0 nTPM
Allen mouse:5.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA060538
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.4
2846 Female, age 79, unknown 35.6
2290 Female, age 72, unknown 33.9
1857 Female, age 85, left hemisphere 33.3
2288 Male, age 75, left hemisphere 32.5
1781 Male, age 74, unknown 32.0
1854 Male, age 80, left hemisphere 31.7
2481 Female, age 94, left hemisphere 31.7
2289 Male, age 61, right hemisphere 28.3
Claustrum
nTPM: 29.3
2392 Female, age 94, both hemispheres 32.9
2198 Male, age 80, both hemispheres 30.3
2284 Female, age 91, both hemispheres 29.9
2491 Male, age 75, both hemispheres 29.8
1956 Male, age 74, unknown 29.6
2196 Female, age 79, unknown 29.3
2568 Male, age 61, both hemispheres 27.9
2292 Female, age 85, both hemispheres 27.5
2645 Female, age 72, unknown 26.8
Globus pallidus, externus
nTPM: 27.1
2395 Male, age 75, both hemispheres 31.0
2772 Female, age 79, unknown 29.7
1996 Male, age 80, right hemisphere 27.6
2567 Female, age 72, unknown 23.8
2646 Male, age 61, right hemisphere 23.5
Globus pallidus, internus
nTPM: 28.3
2287 Male, age 75, right hemisphere 33.4
2483 Female, age 94, right hemisphere 29.6
1818 Male, age 74, unknown 29.4
2778 Female, age 91, both hemispheres 28.3
2037 Male, age 80, right hemisphere 27.0
2111 Female, age 85, right hemisphere 26.5
2566 Female, age 72, unknown 24.1
Nucleus accumbens
nTPM: 32.6
1856 Female, age 91, right hemisphere 35.1
2824 Male, age 61, right hemisphere 34.2
1806 Female, age 85, left hemisphere 33.7
2286 Male, age 75, left hemisphere 33.7
1783 Male, age 74, unknown 33.3
2698 Female, age 72, unknown 32.4
2391 Female, age 94, left hemisphere 30.2
2732 Male, age 80, right hemisphere 28.3
Nucleus basalis of Meynert
nTPM: 28.4
2393 Male, age 80, right hemisphere 31.9
2484 Female, age 94, left hemisphere 29.7
2821 Male, age 75, both hemispheres 28.7
2569 Male, age 61, both hemispheres 23.3
Nucleus of the diagonal band
nTPM: 32.0
1812 Female, age 91, both hemispheres 33.9
2775 Male, age 80, right hemisphere 33.0
2029 Male, age 61, right hemisphere 32.1
2195 Female, age 85, both hemispheres 31.6
1979 Male, age 74, unknown 29.4
Olfactory tubercle
nTPM: 30.8
1846 Male, age 80, right hemisphere 31.4
1998 Female, age 91, both hemispheres 30.8
2856 Male, age 75, right hemisphere 30.7
2487 Female, age 94, left hemisphere 30.4
Putamen
nTPM: 31.5
1838 Male, age 80, right hemisphere 35.5
2466 Female, age 79, unknown 35.0
1937 Female, age 91, right hemisphere 33.3
1829 Male, age 74, unknown 33.0
2482 Female, age 94, left hemisphere 30.0
2489 Female, age 72, unknown 26.9
2647 Male, age 75, left hemisphere 26.7
Septal nuclei
nTPM: 29.4
2031 Female, age 72, unknown 32.4
1960 Male, age 74, unknown 32.1
2009 Female, age 91, both hemispheres 31.0
2629 Female, age 94, right hemisphere 30.6
2199 Male, age 80, right hemisphere 27.6
2059 Female, age 85, both hemispheres 26.2
2394 Male, age 61, left hemisphere 26.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.1
Samples: 246

Max nTPM: 56.6
Min nTPM: 18.1
Std nTPM: 6.0
Median nTPM: 29.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 50.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 43.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 40.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 39.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 53.5
Min nTPM: 15.7
Std nTPM: 5.4
Median nTPM: 29.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 53.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.5
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 43.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 42.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 42.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 42.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 41.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 41.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 40.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 39.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 39.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 29.3
Samples: 205

Max nTPM: 44.5
Min nTPM: 16.1
Std nTPM: 5.3
Median nTPM: 29.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 44.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 44.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 43.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 43.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 39.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 38.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 38.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 37.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 37.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 186.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 151.3
FF:10164-103B2 76 years, female 151.3
Globus pallidus
Scaled Tags Per Million: 103.3
FF:10175-103C4 60 years, female 123.1
FF:10161-103A8 76 years, female 83.4
Nucleus accumbens
Scaled Tags Per Million: 173.2
FF:10037-101F1 23-56 years, mixed 173.2
Putamen
Scaled Tags Per Million: 186.9
FF:10176-103C5 60 years, female 186.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.4
Pig sample Sample description nTPM
Caudate
nTPM: 40.3
Samples: 4

Max nTPM: 46.8
Min nTPM: 37.3
Sample A Female 38.7
Sample B Female 38.4
Sample C Male 46.8
Sample D Male 37.3
Putamen
nTPM: 48.4
Samples: 4

Max nTPM: 71.4
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 42.4
Sample C Male 71.4
Sample D Male 43.1
Septum
nTPM: 42.8
Samples: 4

Max nTPM: 49.3
Min nTPM: 38.8
Sample A Female 43.9
Sample B Female 39.2
Sample C Male 49.3
Sample D Male 38.8
Ventral pallidum
nTPM: 39.9
Samples: 4

Max nTPM: 42.8
Min nTPM: 34.5
Sample A Female 40.1
Sample B Female 42.8
Sample C Male 42.2
Sample D Male 34.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 113.3
Samples: 4

Max nTPM: 116.2
Min nTPM: 107.7
Sample A Male 115.9
Sample B Male 107.7
Sample C Female 116.2
Sample D Female 113.4
Septum
nTPM: 115.0
Samples: 4

Max nTPM: 125.2
Min nTPM: 109.8
Sample A Male 112.1
Sample B Male 125.2
Sample C Female 112.9
Sample D Female 109.8
Ventral forebrain
nTPM: 109.1
Samples: 4

Max nTPM: 112.5
Min nTPM: 106.7
Sample A Male 109.7
Sample B Male 106.7
Sample C Female 107.3
Sample D Female 112.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
71763753 Antisense, RP_050921_02_F02, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 4.5
71763753 Antisense, RP_050921_02_F02, Mouse strain C57BL/6J (56 days, male) 4.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.