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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:69.2 nTPM
HPA:69.2 nTPM
GTEx:115.7 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:182.1 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 69.2
Sample id Sample description nTPM
Amygdala
nTPM: 13.5
2814 Male, age 76, right hemisphere 37.5
2517 Female, age 94, left hemisphere 30.3
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 69.2
2685 Female, age 94, left hemisphere 107.6
2827 Female, age 67, right hemisphere 83.9
2243 Female, age 91, right hemisphere 83.8
2110 Male, age 80, left hemisphere 71.5
2609 Male, age 75, right hemisphere 37.3
1955 Male, age 76, both hemispheres 30.8
Central amygdala
nTPM: 27.5
2826 Female, age 94, left hemisphere 87.6
1905 Male, age 76, both hemispheres 27.6
2239 Male, age 80, left hemisphere 21.4
2701 Female, age 91, right hemisphere 0.7
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 55.6
2535 Female, age 67, right hemisphere 91.3
2829 Male, age 80, left hemisphere 77.6
2242 Female, age 91, right hemisphere 56.7
2429 Female, age 94, left hemisphere 55.2
2428 Male, age 75, right hemisphere 30.9
2240 Male, age 76, both hemispheres 22.3
Lateral amygdala
nTPM: 31.5
2534 Female, age 94, left hemisphere 97.6
1883 Male, age 76, both hemispheres 38.7
2256 Male, age 80, left hemisphere 27.7
2830 Female, age 67, right hemisphere 15.1
2255 Female, age 91, right hemisphere 10.0
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 51.9
1974 Female, age 91, both hemispheres 90.9
2486 Female, age 94, both hemispheres 64.9
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.7
Samples: 152

Max nTPM: 352.0
Min nTPM: 9.0
Std nTPM: 62.7
Median nTPM: 113.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 352.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 273.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 263.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 240.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 232.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 229.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 228.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 222.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 221.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 216.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 209.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 209.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 205.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 204.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 204.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 203.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 202.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 196.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 194.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 191.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 187.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 187.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 185.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 184.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 177.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 176.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 176.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 173.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 173.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 165.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 165.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 163.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 162.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 159.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 158.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 158.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 158.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 151.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 149.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 148.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 147.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 147.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 144.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 143.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 143.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 137.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 133.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 130.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 129.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 129.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 124.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 123.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 122.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 121.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 118.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 116.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 115.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 113.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 113.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 111.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 111.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 108.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 99.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 98.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 93.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 90.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 82.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 72.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 71.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 71.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 68.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 68.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 68.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 67.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 67.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 65.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 65.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 64.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 64.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 61.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 61.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 55.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 53.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 45.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 45.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 44.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 42.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 39.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 27.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 26.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 24.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 13.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.5
FF:10151-102I7 76 years, female 111.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.4
Pig sample Sample description nTPM
Amygdala
nTPM: 83.4
Samples: 4

Max nTPM: 115.0
Min nTPM: 58.8
Sample A Female 115.0
Sample B Female 58.8
Sample C Male 85.7
Sample D Male 74.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 182.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 182.1
Samples: 4

Max nTPM: 234.9
Min nTPM: 155.8
Sample A Male 155.8
Sample B Male 176.0
Sample C Female 234.9
Sample D Female 161.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
1754 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 5.9
1755 Antisense, RP_040526_01_F09, Mouse strain C57BL/6J (56 days, male) 0.3

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