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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:79.0 nTPM
HPA:79.0 nTPM
GTEx:50.0 nTPM
FANTOM5:153.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA002328Antibody CAB037200
Endocrine cells High-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells High-
Paneth cells High-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 79.0
overview
Male, age 65
Small intestine sample 232
nTPM: 96.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 90.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 63.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 65.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 50.0
Samples: 187

Max nTPM: 170.6
Min nTPM: 3.1
Std nTPM: 36.2
Median nTPM: 39.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 170.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 149.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 148.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 148.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 135.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 130.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 130.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 129.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 129.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 126.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 121.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 121.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 116.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 111.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 108.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 107.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 102.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 102.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 101.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 100.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 99.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 98.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 94.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 93.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 92.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 91.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 91.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 89.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 89.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 89.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 87.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 87.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 86.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 85.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 84.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 84.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 83.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 82.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 82.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 79.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 78.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 78.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 75.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 75.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 74.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 74.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 74.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 72.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 71.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 71.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 71.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 70.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 69.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 68.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 67.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 64.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 63.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 62.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 62.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 62.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 61.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 61.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 61.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 61.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 61.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 60.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 60.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 59.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 59.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 57.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 54.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 50.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 50.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 49.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 49.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 49.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 48.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 47.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 47.4
GTEX-1192X-2526-SM-59868 50-59 years, male 46.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 46.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 45.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 45.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 45.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 45.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 43.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 43.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 43.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 43.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 42.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 42.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 40.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 40.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 39.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 39.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 38.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 38.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 36.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 36.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 35.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 35.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 34.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 34.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 33.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 33.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 33.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 32.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 32.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 32.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 30.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 30.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 29.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 29.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 29.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 28.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 28.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 28.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 28.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 27.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 27.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 27.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 27.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 27.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 26.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 26.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 26.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 26.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 26.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 26.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 25.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 25.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 25.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 25.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 23.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 23.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 22.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 22.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 22.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 22.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 21.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 21.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 21.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 21.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 21.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 20.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 19.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 19.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 18.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 18.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 18.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 17.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 17.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 17.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 15.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 15.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 15.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 15.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 14.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 14.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 14.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 13.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 12.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 12.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 11.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 11.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 10.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 9.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 9.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 8.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 8.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 8.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 8.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 8.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 8.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 6.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 6.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 5.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 153.6
FF:10024-101D6 15,40,85 years, mixed 153.6

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