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SLC44A1
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  • SLC44A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:161.1 nTPM
HPA:161.1 nTPM
GTEx:240.3 nTPM
FANTOM5:460.8 Scaled Tags Per Million
Pig:149.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 161.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 131.6
1981 Female, age 72, midline 153.8
2048 Male, age 55, midline 140.5
2816 Male, age 47, midline 130.9
2194 Female, age 79, both hemispheres 123.6
2565 Male, age 75, midline 109.4
Cervical spinal cord, dorsal horn
nTPM: 161.1
2296 Male, age 66, both hemispheres 254.5
2173 Female, age 72, unknown 203.4
2069 Male, age 47, both hemispheres 165.6
1877 Male, age 55, unknown 140.6
2297 Male, age 75, both hemispheres 108.1
2721 Male, age 90, both hemispheres 94.5
Cervical spinal cord, ventral horn
nTPM: 144.3
2068 Male, age 55, unknown 169.1
2098 Female, age 72, unknown 163.1
2809 Male, age 90, both hemispheres 139.1
2480 Male, age 75, both hemispheres 136.3
2295 Male, age 66, both hemispheres 129.9
2820 Female, age 79, both hemispheres 128.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 240.3
Samples: 159

Max nTPM: 422.5
Min nTPM: 68.5
Std nTPM: 75.0
Median nTPM: 242.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 422.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 420.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 420.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 403.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 394.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 393.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 379.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 363.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 363.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 354.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 354.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 352.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 337.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 334.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 333.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 331.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 326.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 324.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 320.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 319.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 318.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 316.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 316.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 315.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 313.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 312.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 311.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 310.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 309.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 309.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 307.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 306.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 301.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 300.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 300.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 299.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 299.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 296.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 296.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 294.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 292.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 290.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 288.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 287.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 283.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 279.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 278.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 277.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 275.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 274.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 273.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 269.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 267.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 267.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 267.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 265.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 263.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 263.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 262.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 261.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 261.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 259.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 256.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 256.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 256.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 253.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 252.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 251.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 250.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 249.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 248.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 248.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 248.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 246.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 245.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 244.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 244.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 243.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 242.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 241.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 240.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 240.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 240.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 239.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 237.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 237.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 237.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 237.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 236.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 233.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 232.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 230.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 226.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 224.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 223.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 222.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 222.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 221.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 221.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 221.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 219.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 215.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 215.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 215.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 215.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 213.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 213.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 212.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 212.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 211.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 209.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 204.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 204.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 194.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 193.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 190.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 189.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 188.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 187.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 186.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 183.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 183.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 178.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 178.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 176.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 172.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 171.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 170.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 168.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 167.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 164.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 161.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 159.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 157.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 152.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 151.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 146.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 142.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 140.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 139.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 138.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 130.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 126.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 123.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 116.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 116.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 109.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 97.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 96.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 87.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 80.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 79.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 460.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 460.8
FF:10159-103A6 76 years, female 533.6
FF:10181-103D1 60 years, female 388.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 149.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 143.0
Samples: 4

Max nTPM: 164.1
Min nTPM: 121.0
Sample A Female 142.8
Sample B Female 164.1
Sample C Male 121.0
Sample D Male 144.1
Ventral spinal cord
nTPM: 149.4
Samples: 4

Max nTPM: 175.4
Min nTPM: 117.1
Sample A Female 155.1
Sample B Female 149.8
Sample C Male 117.1
Sample D Male 175.4

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