MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:9.4 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:23.5 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.2
2019 Male, age 18, unknown 14.9
2586 Male, age 75, left hemisphere 12.2
2828 Female, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 10.9
2411 Female, age 72, unknown 10.7
1870 Female, age 42, unknown 10.5
2219 Male, age 76, both hemispheres 10.5
1827 Male, age 72, unknown 10.1
1830 Male, age 51, unknown 10.1
1833 Male, age 53, unknown 10.1
Dorsal raphe nucleus
nTPM: 11.0
2047 Male, age 72, unknown 11.6
1828 Male, age 53, unknown 11.5
2016 Female, age 72, unknown 11.1
2750 Male, age 76, both hemispheres 11.0
2298 Female, age 72, unknown 9.9
Inferior colliculus
nTPM: 10.7
1890 Male, age 53, unknown 11.6
1848 Female, age 42, unknown 10.9
2097 Female, age 72, unknown 10.6
2849 Male, age 72, unknown 9.6
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Pedunculopontine tegmental nucleus
nTPM: 11.3
2338 Male, age 61, both hemispheres 12.2
1921 Female, age 85, both hemispheres 11.4
2334 Male, age 80, both hemispheres 10.3
Periaquaductal grey, anterior
nTPM: 9.8
1795 Male, age 51, unknown 10.4
1947 Male, age 18, unknown 9.6
2502 Female, age 75, unknown 9.4
Periaquaductal grey, dorsal
nTPM: 10.2
2850 Male, age 76, both hemispheres 10.7
2464 Female, age 72, unknown 10.6
1831 Male, age 72, unknown 10.1
1840 Male, age 53, unknown 9.4
Periaquaductal grey, lateral
nTPM: 9.9
2140 Male, age 76, both hemispheres 10.6
2272 Male, age 74, both hemispheres 9.7
2053 Male, age 18, unknown 9.5
Pretectal area
nTPM: 11.6
1817 Female, age 42, unknown 16.7
2007 Male, age 72, unknown 14.8
1815 Male, age 53, unknown 13.2
1944 Female, age 72, unknown 11.9
1816 Male, age 51, unknown 11.3
2407 Male, age 75, both hemispheres 10.8
2667 Female, age 75, unknown 10.5
2316 Male, age 76, right hemisphere 10.0
2273 Male, age 74, both hemispheres 9.6
2825 Male, age 18, unknown 9.4
2224 Female, age 72, unknown 9.0
Red nucleus
nTPM: 12.0
2785 Male, age 18, unknown 15.6
1904 Male, age 53, unknown 13.0
1821 Female, age 72, unknown 12.3
1865 Male, age 51, unknown 12.3
2823 Male, age 76, right hemisphere 12.1
2503 Female, age 72, unknown 11.7
1954 Female, age 42, unknown 11.6
2769 Male, age 72, unknown 11.6
2227 Male, age 72, unknown 11.3
2725 Female, age 75, unknown 11.3
2588 Male, age 74, left hemisphere 11.2
2584 Male, age 75, left hemisphere 10.6
Substantia nigra
nTPM: 11.5
1889 Female, age 72, unknown 13.2
2665 Male, age 74, both hemispheres 12.1
2583 Male, age 75, right hemisphere 11.9
2409 Female, age 72, unknown 11.7
1851 Male, age 51, unknown 11.6
1941 Male, age 53, unknown 11.4
1916 Female, age 42, unknown 11.2
2590 Female, age 75, unknown 11.2
2699 Male, age 18, unknown 10.7
2241 Male, age 72, unknown 10.0
Superior colliculus
nTPM: 10.7
2668 Female, age 75, unknown 12.8
1995 Male, age 72, unknown 12.0
1913 Female, age 42, unknown 10.9
2587 Male, age 74, left hemisphere 10.9
2664 Male, age 75, both hemispheres 10.9
1839 Male, age 51, unknown 10.3
1895 Male, age 76, right hemisphere 10.1
1796 Male, age 53, unknown 10.0
2087 Female, age 72, unknown 9.8
2261 Male, age 18, unknown 9.5
Ventral tegmental area
nTPM: 10.7
2410 Female, age 72, unknown 12.5
2218 Male, age 76, both hemispheres 11.2
1942 Male, age 51, unknown 10.6
1915 Female, age 42, unknown 10.3
2223 Female, age 72, unknown 10.0
2021 Male, age 53, unknown 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 21.2
Min nTPM: 4.0
Std nTPM: 2.8
Median nTPM: 9.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 17.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 17.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 17.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 16.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 15.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 15.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 14.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 14.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 14.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 35.2
Min nTPM: 13.8
Sample A Female 35.2
Sample B Female 18.3
Sample C Male 16.4
Sample D Male 13.8
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 17.4
Min nTPM: 13.5
Sample B Female 17.4
Sample C Male 13.5
Sample D Male 15.9
Substantia nigra
nTPM: 20.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 16.5
Sample A Female 19.8
Sample B Female 17.0
Sample C Male 16.5
Sample D Male 28.9
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 15.7
Sample A Female 17.6
Sample B Female 15.7
Sample C Male 19.9
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 22.5
Sample A Male 24.3
Sample B Male 23.6
Sample C Female 22.5
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
69261400 Antisense, RP_050113_02_F11, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.