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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:161.7 nTPM
HPA:161.7 nTPM
GTEx:315.6 nTPM
FANTOM5:581.1 Scaled Tags Per Million
Pig:530.8 nTPM
Mouse:1279.9 nTPM
Allen mouse:24.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 161.7
Sample id Sample description nTPM
Amygdala
nTPM: 19.2
2517 Female, age 94, left hemisphere 96.3
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 161.7
2685 Female, age 94, left hemisphere 281.3
2243 Female, age 91, right hemisphere 240.7
2827 Female, age 67, right hemisphere 225.5
2110 Male, age 80, left hemisphere 129.4
2609 Male, age 75, right hemisphere 93.3
1955 Male, age 76, both hemispheres 0.0
Central amygdala
nTPM: 59.2
2826 Female, age 94, left hemisphere 224.9
2239 Male, age 80, left hemisphere 71.0
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 137.5
2535 Female, age 67, right hemisphere 223.0
2829 Male, age 80, left hemisphere 201.3
2429 Female, age 94, left hemisphere 176.9
2242 Female, age 91, right hemisphere 138.8
2428 Male, age 75, right hemisphere 84.9
2240 Male, age 76, both hemispheres 0.0
Lateral amygdala
nTPM: 76.6
2534 Female, age 94, left hemisphere 329.6
2256 Male, age 80, left hemisphere 104.8
2255 Female, age 91, right hemisphere 25.1
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 109.9
1974 Female, age 91, both hemispheres 191.0
2486 Female, age 94, both hemispheres 138.6
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 315.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 315.6
Samples: 152

Max nTPM: 918.3
Min nTPM: 1.7
Std nTPM: 188.6
Median nTPM: 290.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 918.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 826.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 763.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 750.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 702.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 687.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 680.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 664.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 652.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 645.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 643.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 633.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 614.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 608.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 603.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 598.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 581.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 569.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 559.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 547.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 545.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 526.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 523.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 520.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 513.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 512.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 503.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 486.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 486.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 474.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 470.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 466.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 465.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 458.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 454.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 451.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 449.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 437.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 436.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 436.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 424.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 418.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 414.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 413.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 411.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 408.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 397.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 389.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 388.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 385.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 373.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 370.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 367.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 366.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 364.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 360.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 360.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 354.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 352.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 352.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 352.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 341.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 339.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 332.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 323.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 315.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 310.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 306.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 304.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 299.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 295.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 294.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 292.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 292.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 291.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 290.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 288.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 279.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 277.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 274.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 273.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 269.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 258.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 255.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 242.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 238.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 236.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 234.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 232.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 231.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 230.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 228.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 226.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 224.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 217.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 216.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 216.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 206.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 203.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 198.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 194.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 187.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 185.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 181.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 175.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 175.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 171.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 167.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 161.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 160.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 151.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 151.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 150.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 140.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 139.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 138.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 136.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 133.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 132.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 127.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 127.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 126.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 123.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 119.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 119.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 119.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 116.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 103.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 100.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 95.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 23.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 23.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 581.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 581.1
FF:10151-102I7 76 years, female 581.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 530.8
Pig sample Sample description nTPM
Amygdala
nTPM: 530.8
Samples: 4

Max nTPM: 702.8
Min nTPM: 353.1
Sample A Female 702.8
Sample B Female 353.1
Sample C Male 578.9
Sample D Male 488.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1279.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1279.9
Samples: 4

Max nTPM: 1499.8
Min nTPM: 1097.9
Sample A Male 1097.9
Sample B Male 1309.3
Sample C Female 1499.8
Sample D Female 1212.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.5
79360274 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 24.5
79490122 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 18.5

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