MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.7 nTPM
HPA:103.7 nTPM
GTEx:106.3 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:209.6 nTPM
Mouse:420.5 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.2
2411 Female, age 72, unknown 102.0
1870 Female, age 42, unknown 97.0
1827 Male, age 72, unknown 92.3
2019 Male, age 18, unknown 91.3
1833 Male, age 53, unknown 90.3
2219 Male, age 76, both hemispheres 89.2
1830 Male, age 51, unknown 87.4
2828 Female, age 72, unknown 85.6
2666 Male, age 74, left hemisphere 84.3
2586 Male, age 75, left hemisphere 72.7
Dorsal raphe nucleus
nTPM: 90.4
2750 Male, age 76, both hemispheres 102.1
2298 Female, age 72, unknown 93.9
1828 Male, age 53, unknown 87.2
2047 Male, age 72, unknown 86.5
2016 Female, age 72, unknown 82.5
Inferior colliculus
nTPM: 84.3
2097 Female, age 72, unknown 91.1
1890 Male, age 53, unknown 84.6
1848 Female, age 42, unknown 82.3
2849 Male, age 72, unknown 79.0
Median raphe nucleus
nTPM: 96.9
2220 Male, age 76, midline 96.9
Pedunculopontine tegmental nucleus
nTPM: 103.7
2338 Male, age 61, both hemispheres 111.1
2334 Male, age 80, both hemispheres 103.5
1921 Female, age 85, both hemispheres 96.5
Periaquaductal grey, anterior
nTPM: 89.7
1947 Male, age 18, unknown 93.2
2502 Female, age 75, unknown 91.2
1795 Male, age 51, unknown 84.7
Periaquaductal grey, dorsal
nTPM: 84.1
1831 Male, age 72, unknown 87.4
2850 Male, age 76, both hemispheres 86.6
2464 Female, age 72, unknown 84.0
1840 Male, age 53, unknown 78.5
Periaquaductal grey, lateral
nTPM: 88.0
2272 Male, age 74, both hemispheres 94.1
2053 Male, age 18, unknown 88.5
2140 Male, age 76, both hemispheres 81.4
Pretectal area
nTPM: 92.8
1817 Female, age 42, unknown 99.2
1816 Male, age 51, unknown 98.4
1815 Male, age 53, unknown 97.3
1944 Female, age 72, unknown 97.3
2007 Male, age 72, unknown 93.8
2273 Male, age 74, both hemispheres 92.3
2667 Female, age 75, unknown 91.4
2224 Female, age 72, unknown 91.0
2316 Male, age 76, right hemisphere 89.7
2825 Male, age 18, unknown 87.5
2407 Male, age 75, both hemispheres 83.1
Red nucleus
nTPM: 91.6
1821 Female, age 72, unknown 106.0
1904 Male, age 53, unknown 97.1
1865 Male, age 51, unknown 95.3
1954 Female, age 42, unknown 94.5
2823 Male, age 76, right hemisphere 93.9
2785 Male, age 18, unknown 91.1
2725 Female, age 75, unknown 90.5
2503 Female, age 72, unknown 89.7
2769 Male, age 72, unknown 88.4
2227 Male, age 72, unknown 88.3
2584 Male, age 75, left hemisphere 82.0
2588 Male, age 74, left hemisphere 81.8
Substantia nigra
nTPM: 92.3
2241 Male, age 72, unknown 101.3
1916 Female, age 42, unknown 97.0
1941 Male, age 53, unknown 95.6
1889 Female, age 72, unknown 95.4
1851 Male, age 51, unknown 94.9
2409 Female, age 72, unknown 93.5
2590 Female, age 75, unknown 91.4
2699 Male, age 18, unknown 85.7
2583 Male, age 75, right hemisphere 84.5
2665 Male, age 74, both hemispheres 83.9
Superior colliculus
nTPM: 89.2
1913 Female, age 42, unknown 94.2
2261 Male, age 18, unknown 94.0
2587 Male, age 74, left hemisphere 93.2
1895 Male, age 76, right hemisphere 91.0
2087 Female, age 72, unknown 90.6
2668 Female, age 75, unknown 89.9
1995 Male, age 72, unknown 88.0
1839 Male, age 51, unknown 87.9
1796 Male, age 53, unknown 86.0
2664 Male, age 75, both hemispheres 77.4
Ventral tegmental area
nTPM: 93.9
2410 Female, age 72, unknown 100.0
2218 Male, age 76, both hemispheres 97.7
2223 Female, age 72, unknown 93.4
1915 Female, age 42, unknown 91.7
2021 Male, age 53, unknown 90.8
1942 Male, age 51, unknown 89.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.3
Samples: 139

Max nTPM: 189.8
Min nTPM: 58.5
Std nTPM: 24.4
Median nTPM: 101.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 189.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 187.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 184.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 167.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 162.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 161.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 159.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 153.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 145.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 139.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 137.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 209.6
Pig sample Sample description nTPM
Midbrain
nTPM: 209.7
Samples: 4

Max nTPM: 288.4
Min nTPM: 157.9
Sample A Female 288.4
Sample B Female 192.9
Sample C Male 199.4
Sample D Male 157.9
Periaqueductal gray
nTPM: 168.9
Samples: 3

Max nTPM: 185.6
Min nTPM: 157.0
Sample B Female 164.2
Sample C Male 185.6
Sample D Male 157.0
Substantia nigra
nTPM: 194.4
Samples: 4

Max nTPM: 227.5
Min nTPM: 171.5
Sample A Female 227.5
Sample B Female 186.9
Sample C Male 191.5
Sample D Male 171.5
Superior colliculi
nTPM: 188.5
Samples: 4

Max nTPM: 210.0
Min nTPM: 159.5
Sample A Female 202.9
Sample B Female 159.5
Sample C Male 210.0
Sample D Male 181.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 420.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 420.5
Samples: 4

Max nTPM: 428.2
Min nTPM: 414.8
Sample A Male 417.9
Sample B Male 421.0
Sample C Female 414.8
Sample D Female 428.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
71021145 Antisense, RP_050526_02_G07, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.