MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA:22.4 nTPM
GTEx:25.2 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:7.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.6
2586 Male, age 75, left hemisphere 32.4
1827 Male, age 72, unknown 22.5
2828 Female, age 72, unknown 21.4
2219 Male, age 76, both hemispheres 19.5
2666 Male, age 74, left hemisphere 19.1
1833 Male, age 53, unknown 18.3
1830 Male, age 51, unknown 16.7
1870 Female, age 42, unknown 16.0
2019 Male, age 18, unknown 15.1
2411 Female, age 72, unknown 14.6
Dorsal raphe nucleus
nTPM: 18.4
2750 Male, age 76, both hemispheres 20.0
1828 Male, age 53, unknown 19.8
2047 Male, age 72, unknown 17.5
2016 Female, age 72, unknown 17.3
2298 Female, age 72, unknown 17.2
Inferior colliculus
nTPM: 18.9
1890 Male, age 53, unknown 20.2
1848 Female, age 42, unknown 18.7
2097 Female, age 72, unknown 18.6
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Pedunculopontine tegmental nucleus
nTPM: 18.0
2338 Male, age 61, both hemispheres 20.6
2334 Male, age 80, both hemispheres 17.5
1921 Female, age 85, both hemispheres 15.8
Periaquaductal grey, anterior
nTPM: 22.4
1947 Male, age 18, unknown 22.9
1795 Male, age 51, unknown 22.5
2502 Female, age 75, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 18.0
1831 Male, age 72, unknown 20.5
2464 Female, age 72, unknown 17.6
1840 Male, age 53, unknown 17.3
2850 Male, age 76, both hemispheres 16.5
Periaquaductal grey, lateral
nTPM: 19.7
2053 Male, age 18, unknown 23.1
2140 Male, age 76, both hemispheres 18.1
2272 Male, age 74, both hemispheres 17.9
Pretectal area
nTPM: 20.8
1816 Male, age 51, unknown 32.4
1944 Female, age 72, unknown 28.7
2407 Male, age 75, both hemispheres 28.1
2825 Male, age 18, unknown 19.9
2667 Female, age 75, unknown 19.1
2316 Male, age 76, right hemisphere 18.6
2007 Male, age 72, unknown 17.6
1815 Male, age 53, unknown 17.3
2273 Male, age 74, both hemispheres 16.7
1817 Female, age 42, unknown 16.1
2224 Female, age 72, unknown 14.1
Red nucleus
nTPM: 19.7
2584 Male, age 75, left hemisphere 26.6
2725 Female, age 75, unknown 20.7
2227 Male, age 72, unknown 20.6
2769 Male, age 72, unknown 20.2
1821 Female, age 72, unknown 20.1
1865 Male, age 51, unknown 19.9
1954 Female, age 42, unknown 19.9
1904 Male, age 53, unknown 19.5
2503 Female, age 72, unknown 18.8
2588 Male, age 74, left hemisphere 18.5
2823 Male, age 76, right hemisphere 16.1
2785 Male, age 18, unknown 15.8
Substantia nigra
nTPM: 21.3
2583 Male, age 75, right hemisphere 28.3
2665 Male, age 74, both hemispheres 28.1
1916 Female, age 42, unknown 22.2
2590 Female, age 75, unknown 21.6
2699 Male, age 18, unknown 20.3
1851 Male, age 51, unknown 20.0
1941 Male, age 53, unknown 19.8
2241 Male, age 72, unknown 18.9
2409 Female, age 72, unknown 16.7
1889 Female, age 72, unknown 16.6
Superior colliculus
nTPM: 21.1
2261 Male, age 18, unknown 28.0
2087 Female, age 72, unknown 25.7
2664 Male, age 75, both hemispheres 24.6
1796 Male, age 53, unknown 22.0
1913 Female, age 42, unknown 20.6
2668 Female, age 75, unknown 20.5
1995 Male, age 72, unknown 19.2
2587 Male, age 74, left hemisphere 18.4
1895 Male, age 76, right hemisphere 16.3
1839 Male, age 51, unknown 16.0
Ventral tegmental area
nTPM: 18.0
2021 Male, age 53, unknown 19.3
1915 Female, age 42, unknown 18.9
2218 Male, age 76, both hemispheres 17.8
2410 Female, age 72, unknown 17.6
2223 Female, age 72, unknown 17.3
1942 Male, age 51, unknown 16.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.2
Samples: 139

Max nTPM: 52.7
Min nTPM: 12.0
Std nTPM: 7.2
Median nTPM: 24.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 52.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 52.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 47.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 42.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 40.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 39.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 37.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 37.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 36.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 35.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.9
FF:10158-103A5 76 years, female 21.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.9
Sample A Female 19.4
Sample B Female 12.9
Sample C Male 18.4
Sample D Male 13.0
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 11.5
Min nTPM: 9.9
Sample B Female 11.0
Sample C Male 11.5
Sample D Male 9.9
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 15.6
Min nTPM: 13.9
Sample A Female 15.6
Sample B Female 14.4
Sample C Male 13.9
Sample D Male 15.4
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 16.0
Sample C Male 17.3
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.3
Sample A Male 7.8
Sample B Male 8.3
Sample C Female 6.3
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68301634 Antisense, RP_041130_01_E10, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.